Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.2  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.1  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.9  

>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 188 KMPEVLGVWTLEL*VQGQTQDPIRPSRTRIMHKNLKAKEEGQCSNGS 328
           K+P     +T E+  + +T  PIR SR R   +N +AKE     N S
Sbjct: 73  KLPNFFIPFTPEVIKEQKTSRPIRASRRRANLRNRRAKELLAAENAS 119


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 GIRCQKCLEFGHWSYECK 236
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +3

Query: 72  PNLVNFPFEILNMTLGTYNRHQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYE--CKGKR 245
           P+L +F F++ + T  TY        KQ        Q +R    L F    YE    GK 
Sbjct: 519 PDLQHFLFDMNSRTRATYASCLPILAKQASKFLNLAQSLRNAGILSFPESEYENINHGKA 578

Query: 246 KILFVLHVHESCIRI*KPKKKVNAAMAAARYPTRKSV 356
           ++LF    H+  + +   ++ V+  +A +    R+S+
Sbjct: 579 ELLFETGRHDLVVTV---ERHVSTLLADSSSIVRRSL 612


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 737 EFEERINKLVRNKKLKIWKDKFVENKENKI 648
           E     +KLVRN  L +W  +F+   +N I
Sbjct: 447 ELLNSFSKLVRNDNLTLWFSEFIRWSDNPI 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,757
Number of Sequences: 5004
Number of extensions: 39960
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)