Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)             29   5.3  
SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)                28   7.0  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 FPQGIRCQKCLEFGHWSYEC 233
           +P   RC +C E GH SYEC
Sbjct: 101 YPDKSRCYECGEGGHLSYEC 120


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 189 RCQKCLEFGHWSYECKGK 242
           RC +CL   H SYECK K
Sbjct: 357 RCFRCLRKNHRSYECKSK 374


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 186 IRCQKCLEFGHWSYECKGK--RKILFVLHVHE 275
           +RC KC + GH++  C+ K   ++  V+  HE
Sbjct: 233 VRCDKCTKVGHFAAVCRSKPNTRVSQVVDAHE 264


>SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)
          Length = 328

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 713 LVRNKKLKIWKDKFVENKENKIWKYKFVENK 621
           ++  K+  IWKD    N +NKIW    +E K
Sbjct: 15  MIYRKEYDIWKDSL--NNQNKIWAVAEIEKK 43


>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
          Length = 558

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 180 QGIRCQKCLEFGHWSYECKGKR 245
           +G +C KC + GH++  CKG++
Sbjct: 41  RGKKCAKCFKSGHFAACCKGEK 62


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 192 CQKCLEFGHWSYECKGKRKILFVLHVHESCI 284
           C  CL +GH +  CK K+  +    +H +C+
Sbjct: 344 CWGCLTWGHDNRNCKIKKTCISCRELHPTCL 374


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 172 LFLKA*DARSAWSLDTGAMSARANARSYSSFTYTNHA*ESESQRRRSMQQ 321
           L LK+      W LD  ++   AN  S+ +  Y +H  ESE  R  S+ Q
Sbjct: 801 LDLKSEQKGLLWILDEESIFPGANDSSFLARLYVHHCSESEYLRNGSLNQ 850


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 186 IRCQKCLEFGHWSYECKGK 242
           +RC KC + GH++  C+ K
Sbjct: 185 VRCDKCTKVGHFAVVCRSK 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,427
Number of Sequences: 59808
Number of extensions: 290496
Number of successful extensions: 1381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)