Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p pro...    62   6e-10
AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA...    62   6e-10
M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1 ...    29   5.1  
AY118668-1|AAM50528.1|  601|Drosophila melanogaster AT01616p pro...    29   6.7  
AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like pro...    29   6.7  
AE014296-3258|AAF49085.2|  601|Drosophila melanogaster CG17736-P...    29   6.7  

>AY071154-1|AAL48776.1|  176|Drosophila melanogaster RE18415p
           protein.
          Length = 176

 Score = 62.5 bits (145), Expect = 6e-10
 Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 MTL-GTYNRHQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYECKGKRK 248
           MTL G   R  A++K+       FP GIRCQKCL+ GHWSYECK KRK
Sbjct: 1   MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRK 48


>AE014297-2125|AAF55257.1|  176|Drosophila melanogaster CG5516-PA
           protein.
          Length = 176

 Score = 62.5 bits (145), Expect = 6e-10
 Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 MTL-GTYNRHQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYECKGKRK 248
           MTL G   R  A++K+       FP GIRCQKCL+ GHWSYECK KRK
Sbjct: 1   MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRK 48


>M14954-1|AAA70221.1|  426|Drosophila melanogaster putative ORF1
           protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 177 PQGIRCQKCLEFGHWSYECK 236
           P  +RC+KCL FGH +  CK
Sbjct: 183 PLPLRCKKCLRFGHPTPICK 202


>AY118668-1|AAM50528.1|  601|Drosophila melanogaster AT01616p
           protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 509 CCQIQNHCCSLNQTRSPIHCCCH 441
           CC  Q+ C   +Q R+  H CCH
Sbjct: 413 CCSCQSLCNQCSQCRTHPHPCCH 435


>AJ278684-1|CAB99191.1|  488|Drosophila melanogaster gag-like
           protein protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 186 IRCQKCLEFGHWSYECK 236
           IRC +CLEFGH +  CK
Sbjct: 407 IRCFRCLEFGHRAPYCK 423


>AE014296-3258|AAF49085.2|  601|Drosophila melanogaster CG17736-PA
           protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 509 CCQIQNHCCSLNQTRSPIHCCCH 441
           CC  Q+ C   +Q R+  H CCH
Sbjct: 413 CCSCQSLCNQCSQCRTHPHPCCH 435


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,730,897
Number of Sequences: 53049
Number of extensions: 432281
Number of successful extensions: 1848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)