Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    33   0.28 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    33   0.28 
AF016424-9|AAB65327.2|  530|Caenorhabditis elegans Udp-glucurono...    28   6.1  
AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 CQKCLEFGHWSYECKGKRKIL 254
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 CQKCLEFGHWSYECKGKRKIL 254
           C++C E GHW YEC  + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687


>AF016424-9|AAB65327.2|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein61 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 173 FSSRHKMPEVLGVWTLEL*VQGQTQDPIRPSRTRIMHKNLKAKEEGQ 313
           F S  K+P+ +  + L+  V+G T+  I   ++ +++KN+  K+  Q
Sbjct: 59  FESNVKVPKGVKTYQLDAAVEGITKQSIEKEQSAMLYKNMGLKDMPQ 105


>AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical
           protein T02B11.8 protein.
          Length = 94

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 509 CCQIQNHCCSLNQTRSPIHCCCHYQTSSNP 420
           CC   NHCC    + + I  C    T SNP
Sbjct: 58  CCPGTNHCCPPGFSCTTIGTCKRTTTLSNP 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,232
Number of Sequences: 27780
Number of extensions: 224685
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)