Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    39   0.003
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...    30   1.9  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   5.7  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    27   9.9  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    27   9.9  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 189 RCQKCLEFGHWSYECKGKR 245
           +CQKC + GHW+YECK +R
Sbjct: 99  QCQKCFQAGHWTYECKNER 117


>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 743 MKEFEERINKLVRNKKLKIWKDKFVENKENKIWKYKFVENK 621
           M+  EE+++KLV   K+   KD  ++ K N+I K K  +NK
Sbjct: 136 MESHEEKLHKLVMQSKINDTKD-VMKRKANEIDKSKIEKNK 175


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 192 CQKCLEFGHWSYECKGK 242
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 734 FEERINKLVRNKKLKIWKDKFV 669
           F + + ++VRNKK++ WK  +V
Sbjct: 337 FRKMVMEIVRNKKVRFWKKVYV 358


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 132 HQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYEC 233
           H A  +++      F QG  C  C   GH++ +C
Sbjct: 37  HDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,197
Number of Sequences: 28952
Number of extensions: 203793
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)