Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20122
(584 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 71 8e-13
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 66 2e-11
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 5e-11
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 58 6e-09
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 3e-07
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 51 5e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 6e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 48 6e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 8e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 8e-06
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.005
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.007
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.026
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.061
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.11
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.11
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.14
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.14
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.19
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.19
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.24
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.43
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.43
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.43
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.43
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.43
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.43
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 31 0.43
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.57
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.57
At3g31950.1 68416.m04046 hypothetical protein 31 0.57
At5g47430.1 68418.m05844 expressed protein 30 0.99
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 0.99
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.99
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 0.99
At4g17410.1 68417.m02607 expressed protein 30 0.99
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 0.99
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 0.99
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 0.99
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 0.99
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 30 1.3
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.3
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 1.7
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 1.7
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 1.7
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 1.7
At5g61670.2 68418.m07738 expressed protein 29 2.3
At5g61670.1 68418.m07737 expressed protein 29 2.3
At4g06479.1 68417.m00885 hypothetical protein 29 2.3
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.3
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.3
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 29 3.0
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.0
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.0
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.0
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.0
At2g31850.1 68415.m03889 expressed protein 29 3.0
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 29 3.0
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.0
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.0
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.0
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 4.0
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ... 28 4.0
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 5.3
At4g06526.1 68417.m00938 hypothetical protein 28 5.3
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 5.3
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 5.3
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 7.0
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 7.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 7.0
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 27 9.2
At5g50500.1 68418.m06255 hypothetical protein 27 9.2
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 9.2
At5g21140.1 68418.m02524 expressed protein 27 9.2
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 9.2
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 9.2
At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein... 27 9.2
At2g43620.1 68415.m05422 chitinase, putative similar to basic en... 27 9.2
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ... 27 9.2
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 9.2
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 27 9.2
At1g70000.1 68414.m08056 DNA-binding family protein contains Pfa... 27 9.2
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ... 27 9.2
At1g30660.1 68414.m03749 toprim domain-containing protein contai... 27 9.2
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 27 9.2
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 27 9.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 70.5 bits (165), Expect = 8e-13
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESA--TQTCYNCNKSGH 447
CY C G GHIAR+CA + +PS CY C +GH+AR+C + G CY C K GH
Sbjct: 232 CYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Query: 448 ISRNC 462
+R C
Sbjct: 291 FAREC 295
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRE 405
D CY C GH+AR+C Q CY C GH AR+C + G
Sbjct: 164 DGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVR 223
Query: 406 S---ATQTCYNCNKSGHISRNCP---DGTKTCYVCG 495
S + TCY+C GHI+R+C ++ CY CG
Sbjct: 224 SGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +1
Query: 280 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 417
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 418 ---TCYNCNKSGHISRNC 462
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 54.8 bits (126), Expect = 4e-08
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 31/103 (30%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPE---------GGR 402
CY C TGH AR+C + + CY C GH+AR+C + G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 403 ESATQTCYNCNKSGHISRNCPD------------GTKTCYVCG 495
+ CY C GH +R+C G+ TCY CG
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 250 CEDCKEEADRCYRCNGTGHIARECAQ-----SPDEPSCYNCNKTGHIARNC 387
C ++ + CY+C G+GH+AR+C Q ++ +CY C K GH AR C
Sbjct: 245 CATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
CY C TGHFAR+CT G + + C+ C GH AR
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
CY+C +GH AR+C Q R SG C+KC + GHFAR
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKEGHFAR 293
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 119 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
S CY C GH +++C GG +R E C+ C TGHFAR
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFAR 145
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKCNRTGHFAR 256
CY C GH AR+CTQ V + D + C+ C GHFAR
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFAR 211
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-IARKR 271
CY C GHFAR+CTQ C+ C GH AR A KR
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
Score = 35.1 bits (77), Expect = 0.035
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 113 SSSVCYKCNRTGHFARECT 169
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 30.3 bits (65), Expect = 0.99
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 421 CYNCNKSGHISRNCPDG 471
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 280 CYRCNGTGHIARECA 324
CY+C GH AREC+
Sbjct: 282 CYKCGKEGHFARECS 296
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 423
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 424 YNCNKSGHISRNCP----------DGTKTCYVCGK 498
Y C +GH++R+C G+ C++CGK
Sbjct: 255 YECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGK 289
Score = 59.7 bits (138), Expect = 1e-09
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGR 402
CY C GH AR+C QS S CY+C + GH+A++C GGR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 403 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVCG 495
S CY C GH +R+C G TCY CG
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCG 230
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIARNCPEGGRESA-----TQTCY 426
CY C G GHIA+ C +CY C TGH+AR+C G S+ + C+
Sbjct: 226 CYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCF 285
Query: 427 NCNKSGHISRNC 462
C K GH +R C
Sbjct: 286 ICGKEGHFAREC 297
Score = 50.8 bits (116), Expect = 7e-07
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Frame = +1
Query: 280 CYRCNGTGHIAREC--------------AQSPDEPSCYNCNKTGHIARNCPE------GG 399
C+ C GH+A++C +S E CY C GH AR+C + GG
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 400 RESATQTCYNCNKSGHISRNCPDGT 474
+ CY+C + GH++++C G+
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/44 (50%), Positives = 26/44 (59%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
CY+C TGH AR+C + G S SG KCF C + GHFAR
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFAR 295
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARIAR 265
CY C GHFAR+C Q G + G R C+ C GH A+ R
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCR 177
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARIARKRL 274
CY C GHFAR+C Q G + G C+ C GH A++ ++
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKI 243
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSR---DSGFNRQREKCFKCNRTGHFARIARK 268
CY C GH A++C G +R G + C+ C GHFAR R+
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQ 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 113 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARIARK 268
S C+ C GH A++C G G S G R+ +C+ C GHFAR R+
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQ 147
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Frame = +1
Query: 343 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNCPD------- 468
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSG 154
Query: 469 ----GTKTCYVCGK 498
G + CY CG+
Sbjct: 155 GGGGGGRPCYSCGE 168
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 119 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARIARKR 271
S CY C GH A+ CT + S G R C++C TGH AR +R
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHLARDCDRR 270
Score = 32.3 bits (70), Expect = 0.24
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 116 SSVCYKCNRTGHFARECT 169
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 382 NCPEGGRESATQTCYNCNKSGHISRNCPDGT 474
N E + C+NC + GH++++C G+
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGS 113
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 64.5 bits (150), Expect = 5e-11
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +1
Query: 247 LCEDCKEEADR---CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEGGRE 405
LC + K E +R C +C GH + C + +E S CYNC TGH +CP +
Sbjct: 88 LCPE-KSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMED 146
Query: 406 SATQ--TCYNCNKSGHISRNCPDGTKTCYVCG 495
T+ +C+ C GHIS+NCP+ Y G
Sbjct: 147 GGTKFASCFICKGQGHISKNCPENKHGIYPMG 178
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 292 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 471
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 472 T------KTCYVCG 495
K CY CG
Sbjct: 118 NNESSEKKLCYNCG 131
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 116 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 247
+ +C +C R GH + C + + + +++ C+ C TGH
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGH 135
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 122 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
+CY C TGH C D G + CF C GH ++
Sbjct: 126 LCYNCGDTGHSLSHCP---YPMEDGG--TKFASCFICKGQGHISK 165
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +1
Query: 268 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 447
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 448 ISRNCPDGTKTCYVCGK 498
++ NC C+ CGK
Sbjct: 104 VASNC-SNEGICHSCGK 119
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/69 (40%), Positives = 35/69 (50%)
Frame = +1
Query: 256 DCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN 435
DC C C GHIA EC E C+NC + GH+A NC G C++C
Sbjct: 69 DCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------ICHSCG 118
Query: 436 KSGHISRNC 462
KSGH +R+C
Sbjct: 119 KSGHRARDC 127
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 247 LCEDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRESAT 414
+ +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 104 VASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------TND 156
Query: 415 QTCYNCNKSGHISRNCPDGTKTCYVC 492
+ C NC SGHI+R+C + C +C
Sbjct: 157 KACKNCRTSGHIARDCRN-DPVCNIC 181
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
C C GH+A +C ++ +C NC +GHIAR+C C C+ SGH++R+
Sbjct: 140 CNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSISGHVARH 190
Query: 460 CPDG 471
CP G
Sbjct: 191 CPKG 194
Score = 44.0 bits (99), Expect = 7e-05
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 28/101 (27%)
Frame = +1
Query: 247 LCEDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP------------ 390
L DC + C C +GHIAR+C ++P C C+ +GH+AR+CP
Sbjct: 149 LAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSR 204
Query: 391 --EGGRE--------------SATQTCYNCNKSGHISRNCP 465
+GG + SA C+NC GH + CP
Sbjct: 205 VRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 501
C NC + GH AR+C S C NC GHI+ C ++ C+ C +P
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREP 101
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Frame = +2
Query: 119 SVCYKCNRTGHFARECT------QGGVVSRDSGFNRQREKCFKCNRTGHFA 253
++C C R GHFAR+C+ G+ + +C+ C GH A
Sbjct: 55 NLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVA 105
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 113 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 253
+ +C+ C ++GH AR+C+ SR +G R CFK GH A
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLA 150
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = +2
Query: 122 VCYKCNRTGHFARECTQGGVVS--RDSGF----NRQREKCFKCNRTGHFAR 256
+C C + GH A +CT R SG R C C+ +GH AR
Sbjct: 139 LCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVAR 189
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 122 VCYKCNRTGHFARECTQGGVVSRDSGFNR 208
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 396
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 397 ----GRESATQTCYNCNKSGHISRNCPDGTK 477
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +2
Query: 116 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
+S CY+C GHFAREC +S G + C++CN +GHFAR
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFAR 369
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 268 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 408
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +1
Query: 280 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 456
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 457 NCPD----GTK--TCYVCG 495
+CPD G+K C CG
Sbjct: 222 DCPDKYKNGSKGAVCLRCG 240
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGH 447
C+ C H A++C++ D CY C KTGH A++CP+ + S C C GH
Sbjct: 191 CFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 343 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK 498
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKK 215
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 20/94 (21%)
Frame = +1
Query: 253 EDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGR 402
ED K+ +CY C GH+ C P SCY C + GH C
Sbjct: 256 EDLKDV--QCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNEN 310
Query: 403 ESAT----------QTCYNCNKSGHISRNCPDGT 474
+SAT CY C + GH +R CP+ +
Sbjct: 311 DSATPERLFNSREASECYRCGEEGHFARECPNSS 344
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 113 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 238
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQS 330
+E CYRCNG+GH AREC S
Sbjct: 352 RESQTLCYRCNGSGHFARECPNS 374
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARIARKRLTV 280
CY+C + GH C + S ++ FN R+ +C++C GHFAR ++
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 281 AT 286
+T
Sbjct: 347 ST 348
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 125 CYKCNRTGHFAREC 166
CY C +TGH A++C
Sbjct: 210 CYICKKTGHRAKDC 223
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 426
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 427 NCNKSGHISRNC-----PDGTKTCYVCGK 498
C + GH C + +C++CG+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGR 109
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +1
Query: 277 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 441
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 442 GHISRNCPDGTKTCY 486
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 426
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 427 NCN----------KSGHISRNCPDGTKTCY 486
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 301 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 462
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 463 PDGTK 477
P+ ++
Sbjct: 211 PNSSQ 215
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQS 330
+E CY C G GHIAR+C S
Sbjct: 191 RETRRLCYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 0.75
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 50 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 184
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHF 250
CY+C + GH C G DS CF C R GHF
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHF 113
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 51.2 bits (117), Expect = 5e-07
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 25/101 (24%)
Frame = +1
Query: 271 ADRCYRCNGTGHIAREC-AQSPD---EPS----------CYNCNKTGHIARNCP------ 390
A C++C GH +R+C AQS + EP CY C K GH +R+C
Sbjct: 267 AGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQ 326
Query: 391 --EGGRESATQT---CYNCNKSGHISRNCPDGTKTCYVCGK 498
+ G+ +T + CY C K+GH SR+C +T GK
Sbjct: 327 QFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 50.4 bits (115), Expect = 9e-07
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +1
Query: 280 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 402
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 403 -ESATQTCYNCNKSGHISRNC 462
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 107 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFAR 256
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++R
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSR 281
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 113 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGHFAR 256
SS CYKC + GH++R+CT Q SG + C+KC + GH++R
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSR 353
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = +2
Query: 80 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRT 241
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Query: 242 GHFAR 256
GH++R
Sbjct: 313 GHWSR 317
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 80 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 217
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 271 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 429
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 331 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
C+ C GH+AR+CT G + KC++C GH R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIER 93
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 498
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 87
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSG 199
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 271 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 429
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 331 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
C+ C GH+AR+CT G + KC++C GH R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIER 104
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 498
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 98
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSG 199
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 271 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 429
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 331 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
C+ C GH+AR+CT G + KC++C GH R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIER 134
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 498
T +R P G R+ ++ C+NC GH +R+C D CY CG+
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 128
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSG 199
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 277 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 387
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 331 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 462
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 116 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
S C+ C GH+AR+CT G + KC++C GH R
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIER 134
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 498
T +R P G R++ ++ C+NC GH +R+C D CY CG+
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 128
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQSP 333
++CYRC GHI R C SP
Sbjct: 121 NKCYRCGERGHIERNCKNSP 140
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 47.6 bits (108), Expect = 6e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 277 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 387
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 331 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 462
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 116 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR 256
S C+ C GH+AR+CT G + KC++C GH R
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIER 93
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCGK 498
T +R P G R++ ++ C+NC GH +R+C D CY CG+
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGE 87
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQSP 333
++CYRC GHI R C SP
Sbjct: 80 NKCYRCGERGHIERNCKNSP 99
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 460 CPDG 471
C G
Sbjct: 195 CTSG 198
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGV-VSRDSGFNRQRE-----------KCFKCNRTGHFAR 256
C+KC GH AREC+QGG S G R C+ C +GHFAR
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFAR 193
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGG 178
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 367 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 471
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 468
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 280 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 441
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 442 GH 447
H
Sbjct: 96 DH 97
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGH 247
CYKC + GHFAR C VV++ + C+ C+ GH
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGH 70
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 268 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSG 444
E+ + + N R + + C NC + GH CPE G + + C C G
Sbjct: 240 ESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKG 299
Query: 445 HISRNCP 465
H R CP
Sbjct: 300 HNRRTCP 306
Score = 34.3 bits (75), Expect = 0.061
Identities = 32/102 (31%), Positives = 37/102 (36%), Gaps = 27/102 (26%)
Frame = +1
Query: 241 RTLCEDCKEEADRCYRCNGTG---HIARECAQSPD---------EPSCYNCNKTGHIARN 384
R C + ADR +RC G G H R C +S C C + GH +R
Sbjct: 276 RHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRT 335
Query: 385 C--PEG------GRESA-------TQTCYNCNKSGHISRNCP 465
C P G G S T C C K GH R CP
Sbjct: 336 CRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARIARK 268
C C GH R C + +V++ G + + KC C GH +R RK
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRK 338
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 110 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 214
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEG 396
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 268 EADRCYRCNGTGHIAREC 321
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 170 QGGVVSRDSGFNRQREKCFKCNRTGHFARIARK 268
+GG R G + KC++C GHFAR R+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECRR 106
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 394 GGRESATQT--CYNCNKSGHISRNCPDG 471
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 110 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 214
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEG 396
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 268 EADRCYRCNGTGHIAREC 321
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 170 QGGVVSRDSGFNRQREKCFKCNRTGHFARIARK 268
+GG R G + KC++C GHFAR R+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECRR 106
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 394 GGRESATQT--CYNCNKSGHISRNCPDG 471
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 229 VQPHRTLCEDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 399
+ P +L E+ +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 400 RESATQTCYNCNKSGHISRNCPD 468
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 364 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 480
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 214
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.43
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 394 GGRESATQTCYNCNKSGHISRNC 462
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.5 bits (68), Expect = 0.43
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 218 KCFKCNRTGHFARIARKR 271
KC++C TGHFAR R R
Sbjct: 100 KCYECGETGHFARECRNR 117
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 277 RCYRCNGTGHIAREC 321
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.99
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGG 399
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 438
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 439 SGHISRNCPDG 471
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.007
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGG 178
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.011
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 343 SCYNCNKTGHIARNCPEGGR 402
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.020
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 119 SVCYKCNRTGHFARECTQGG 178
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 394 GGRESATQTCYNCNKSGHISRNCPDG 471
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 125 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 214
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 173 GGVVSRDSGFNRQRE--KCFKCNRTGHFARIARKR 271
GG D G R KC++C +GHFAR R R
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR 114
Score = 30.3 bits (65), Expect = 0.99
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 397 GRESATQTCYNCNKSGHISRNC 462
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 277 RCYRCNGTGHIAREC 321
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 465
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVSRDSG 199
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 477
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 9/32 (28%)
Frame = +2
Query: 188 RDSGFNRQREK---------CFKCNRTGHFAR 256
RD G++R R + CFKC + GHFAR
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFAR 131
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 280 CYRCNGTGHIAREC 321
C++C GH AREC
Sbjct: 120 CFKCGKPGHFAREC 133
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 418 TCYNCNKSGHISRNCPDGT---KTCYVC 492
TCY+C + HI+ +CP T K+C++C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFIC 171
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 343 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 462
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 346 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 471
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 0.99
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +1
Query: 280 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 414
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 352 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 333 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 476
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 277 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 399
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.19
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGG 178
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.24
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 337 EPSCYNCNKTGHIARNCPEGG 399
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 394 GGRESATQTCYNCNKSGHISRNCP 465
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 215 EKCFKCNRTGHFAR 256
++CFKC R GH+AR
Sbjct: 126 DECFKCGRVGHWAR 139
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 274 DRCYRCNGTGHIAREC 321
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 400 RESATQTCYNCNKSGHISRNCPD 468
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 343 SCYNCNKTGHIARNCPE 393
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.43
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 388 PEGGRESATQTCYNCNKSGHISRNC 462
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.75
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 253 EDCKEEADRCYRCNGTGHIAREC 321
E+ + CYRC GH+AR+C
Sbjct: 917 EETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.75
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 122 VCYKCNRTGHFAREC 166
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 0.99
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 346 CYNCNKTGHIARNC 387
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 441
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 399
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.43
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 403 ESATQTCYNCNKSGHISRNCP 465
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGGVVS 187
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 337 EPSCYNCNKTGHIARNCPEGGRESATQ 417
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 418 TCYNCNKSGHISRNCPDGTKTCYV 489
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 280 CYRCNGTGHIAREC 321
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.43
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGG 178
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 173 GGVVSRDSGFNRQREKCFKCNRTGHFAR 256
GG SR G ++CFKC R GH+AR
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWAR 128
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 337 EPSCYNCNKTGHIARNCPEGG 399
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDE 339
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.43
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQGG 178
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 173 GGVVSRDSGFNRQREKCFKCNRTGHFAR 256
GG SR G ++CFKC R GH+AR
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWAR 128
Score = 31.1 bits (67), Expect = 0.57
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 337 EPSCYNCNKTGHIARNCPEGG 399
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDE 339
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 31.5 bits (68), Expect = 0.43
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 209 QREKCFKCNRTGHFA 253
Q+EKCF C +TGHFA
Sbjct: 261 QQEKCFVCGQTGHFA 275
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 307 IARECAQSP-DEPSCYNCNKTGHIARNCP 390
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 5.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 125 CYKCNRTGHFAREC 166
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 333 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 476
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 333 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 476
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 286 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 453
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 454 RNCP 465
CP
Sbjct: 327 MYCP 330
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.99
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 286 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 399
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 122 VCYKCNRTGHFARECTQGG 178
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 0.99
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 412 TQTCYNCNKSGHISRNCPD 468
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGG 399
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.99
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 95 SKPIAMSSSVCYKCNRTGHFAREC 166
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 0.99
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 447
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 448 ISRNC 462
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.99
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 122 VCYKCNRTGHFARECTQGG 178
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 307 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 0.99
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +1
Query: 313 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 459
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 460 CPDGTKTCYVCG 495
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 402
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 402
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 477
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 247 LCEDCKEEADRCYRCNGTGHIAR-ECAQSPDEPSCYNCNKTGHIARNCPEGGRESA-TQT 420
+CE CKEE+D C ++ ECA P Y ++ H + C +G ++ A +
Sbjct: 435 VCETCKEESDYVLTCMDCDYVLDFECATLPPTVR-YKYDR--HPLKLCYDGDKDMAGSYW 491
Query: 421 CYNCNK 438
C C K
Sbjct: 492 CEICEK 497
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 412 TQTCYNCNKSGHISRNCPD-GTKTC 483
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSP 333
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 125 CYKCNRTGHFARECTQG 175
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 367 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 465
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 346 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 495
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 465
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 465
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 441
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 442 GHIS 453
G ++
Sbjct: 128 GSLT 131
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 417
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 418 TCYNCNKSGHISRNCP 465
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 417
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 418 TCYNCNKSGHISRNCP 465
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Frame = +1
Query: 190 GFRFQSAT*EVLQVQPHRTLCEDCKEEADR-CYRCNGTGHIARECAQSP-------DEPS 345
G+ S +Q +++ + A R C C+ T H EC P D
Sbjct: 267 GYGINSKVKPGIQATARKSVGKKLATPAKRPCEICSHTDHPTEECLYPPQTIPYTDDYAK 326
Query: 346 CYNCNKTGHIARNC 387
CY C GH++ C
Sbjct: 327 CYYCEGMGHMSMYC 340
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 435
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 436 KSGHISRNCP 465
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 421 CYNCNKSGHISRNCPDGTKT 480
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 346 CYNCNKTGHIARNCP 390
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 110 MSSSVCYKCNRTGHFAREC 166
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 502 RACRTRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 359
R C T + C C RC CS S S T PP S+ C P C
Sbjct: 318 RTC-TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 441
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 442 GHISRNCP 465
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 262 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 441
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 442 GHISRNCP 465
G + CP
Sbjct: 205 GKVM--CP 210
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 415 QTCYNCNKSGHISRNCPD 468
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 415 QTCYNCNKSGHISRNCP 465
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 415 QTCYNCNKSGHISRNCP 465
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 457 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 371
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -2
Query: 469 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 326
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 DCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 432
DC+ A RCY G AR C + PS N + I E G SA ++C
Sbjct: 127 DCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFSC 181
Query: 433 NKS 441
S
Sbjct: 182 KSS 184
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 352 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 352 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 352 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 459
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 83 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 193
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 265 EEADRCYRCNGTGHIARECAQS 330
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 334 DEPSCYNCNKTGHIARNCPE 393
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 421 CYNCNKSGHISRNCP 465
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
similar to SP|P46688 Gibberellin-regulated protein 2
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 119
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -2
Query: 535 FRAXSHSR---ECGRACRTRSTSWCRRDSCGRCGRTCCS 428
F+ H R CG AC R + R+ C R +CC+
Sbjct: 49 FKRTYHHRPRINCGHACARRCSKTSRKKVCHRACGSCCA 87
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 196
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 390
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 274 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 444
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 445 HISRNC 462
IS C
Sbjct: 275 EISTPC 280
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 209 QREKCFKCNRTGHFA 253
Q+E+CF C + GHFA
Sbjct: 260 QQERCFLCGQMGHFA 274
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 307 IARECAQSPDEPS-CYNCNKTGHIARNC 387
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 289 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 390
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 357 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQA 500
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKA 679
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 259 CKEEADRCYRCNGTGHIARECA 324
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 271 PLPCNPRKVSCAVALEALLTLPIETGIPRHHAPLRAFAREMPGP 140
PLP +S ++ L L LP TG+ H+P F PGP
Sbjct: 185 PLPDGDNALSASLPLPPLPPLPPTTGLTLPHSP---FPPPPPGP 225
>At5g50500.1 68418.m06255 hypothetical protein
Length = 135
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 247 LCEDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNC 357
LC +R +R +G H + Q P + SC +C
Sbjct: 24 LCRKTGHSDERLHRKSGHNHFIKNKFQHPRKASCMSC 60
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 301 GHIARECAQSP-DEPSCYNCNKTGHIARNC 387
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +1
Query: 313 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 492
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 493 GKP 501
GKP
Sbjct: 241 GKP 243
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +1
Query: 280 CYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 432
C+RC GH +C + + D P C G RE+ + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 390
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 253
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 301 PCRYICSNGQPLPCNPRKVSCAVALEALLTLPIETGIPRHHAPLRAFAR 155
P RYICS Q P + +C+ LE+++ + H P A+
Sbjct: 10 PNRYICSRRQQTPRRMAEQTCSQNLESIVGFKKKGPSTNFHMPAGILAK 58
>At2g43620.1 68415.m05422 chitinase, putative similar to basic
endochitinase CHB4 precursor SP:Q06209 from [Brassica
napus]
Length = 283
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 517 SRECGRACRTRSTSWCRRDSCGR----CGRTCCSYSRSASQTPAPPRDS 383
S++CG + R CG CG C S S+S TP PP S
Sbjct: 28 SQQCGTTGCAANLCCSRYGYCGTTDAYCGTGCRSGPCSSSTTPIPPTPS 76
>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 396
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 226 QVQPHRTLCEDCKEEADRC-YRCNGTG-HIARECAQSPDEPSCYNCNK 363
Q +R +C+ C E A+ Y+C G + C Q P Y C +
Sbjct: 28 QTHQNRRMCDICDESAEGLYYQCKPCGFDVHPLCTQLPQHSWRYKCGQ 75
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 415 ASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA 302
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 373 CGPSCCSCNTTARPGSVRTRALCAPCRYICS 281
C P CC CN+ + VRT Y CS
Sbjct: 638 CRPLCCVCNSRCKLPFVRTLPEDGADLYFCS 668
>At1g70000.1 68414.m08056 DNA-binding family protein contains Pfam
domains, PF00249: Myb-like DNA-binding domain and
PF00098: Zinc knuckle
Length = 261
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 412 TQTCYNCNKSGHISRNCPDGTKT 480
+++C C +GH SR CP T
Sbjct: 2 SRSCSQCGNNGHNSRTCPTDITT 24
>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 726
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 508 CGRACRTRSTSWCRRDSCGRCGRTCCSYSRSASQT 404
CG CR + + C SCG G T ++S+ A+Q+
Sbjct: 361 CG-VCRKKIDNDCGGYSCGNSGCTYVAHSKCATQS 394
>At1g30660.1 68414.m03749 toprim domain-containing protein contains
Pfam profile PF01751: Toprim domain
Length = 321
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 433 NKSGHISRNCPDGTKTCYVCGK 498
++ G ++NCP G ++C +C K
Sbjct: 43 SEQGIDAQNCPPGVRSCLICPK 64
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 420
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 280 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 420
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,821
Number of Sequences: 28952
Number of extensions: 236158
Number of successful extensions: 1455
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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