Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20121
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    25   6.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   6.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   6.8  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 394 NLIISQCTFSRKNFEKF 344
           NL ++ C F++ +FEKF
Sbjct: 54  NLFLNDCKFNKNSFEKF 70


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 294 SRKCSDTMRGRGTWQSSNFSKFFLEKVHWEIIKFNN 401
           SR+   T   +GT QS+ F+  FLE +  E  K +N
Sbjct: 81  SRQFKITYFPQGTLQSAGFTSIFLEYIPSEEEKLSN 116


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 246 FEFPNSIKRYSYRSKLSRKCSDTMRGR-GTWQSSNFSKFFLEKVHWEIIKFNN 401
           +EF      Y   S   + C +  +     ++ S  ++  +EK +W+++K NN
Sbjct: 340 YEFGFETGNYYTLSNFEKYCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDNN 392


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 312 YQNIYDLI*IDTNTVLLN 259
           +Q IYDL+ +D NTV  N
Sbjct: 688 FQTIYDLLPVDENTVAPN 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,705
Number of Sequences: 5004
Number of extensions: 42361
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)