Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20121
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      31   1.0  
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   28   5.4  
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        27   9.5  
SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 28   HFPTKLCIFTDTKQLINHRYYTFKP 102
            HFPT  C+   T   I+H Y  FKP
Sbjct: 1651 HFPTHCCMIPKTFDSIDHYYEVFKP 1675


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 119  IQNKTNHTT-SLLVFPLKSLHTSYVRRYRRFSNFTVTNEYYVLVRVPEFNKT 271
            I  KT +TT S+L  P+K  H   VRR RR+ N     +  V+      NKT
Sbjct: 1115 IDKKTGYTTRSILCMPIKD-HDGEVRRIRRYVNEPQGQDGKVIGVAQVINKT 1165


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 77  TTVITHLNQEETLNIQNKTNHTTSLLVFPLKSLHTSYVRRYRRFSNFTVTNEYYVLVRVP 256
           TT+ T  N   T  I   TN+TT++         T  +  Y    N T+T  Y  +V + 
Sbjct: 383 TTITTITNYTTTTTI---TNYTTTVSTTITNYTTTITINNYTTTVNTTITTNYTTIVTIT 439

Query: 257 -EFNKTVFVSI*IKS 298
              N T  V+I I +
Sbjct: 440 ITTNYTTIVTITIST 454


>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 133 KSHNFTPRVPAKKSSYFIRQTISSLLKLY 219
           + HN  P +  +K   FI QT+ SL+K +
Sbjct: 272 RKHNGPPVIDPRKPGVFINQTVLSLIKSF 300


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 152 LVFPLKSLHTSYVRRYRRFSNFTVTNEYYVLVRVP-EFNKTV 274
           L+FPL S     V RYRR +N    NE  V+ +   +F  TV
Sbjct: 223 LLFPLISRLEDDVSRYRRNANNATKNEKQVVTKYEVQFQSTV 264


>SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 322 GAERGSPQTFQSFFLKKYIGKLSNLITQKTD 414
           G     P T Q   LK+   KL+ L TQKTD
Sbjct: 469 GENENRPDTIQMALLKEREKKLTELKTQKTD 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,869
Number of Sequences: 59808
Number of extensions: 266892
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)