Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20121
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X66087-1|CAA46886.1|  355|Homo sapiens a-myb protein.                  32   1.5  
X13294-1|CAA31656.1|  746|Homo sapiens protein ( Human mRNA for ...    32   1.5  

>X66087-1|CAA46886.1|  355|Homo sapiens a-myb protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 89  THLNQEETLNIQNKTNHTTSLLVFPLKSLHTSYVRRYRRFSNFTVTNEYYVLVR 250
           T L  E+  ++Q++   TTSLL+ PL  +H +         +   TN+ Y L +
Sbjct: 242 TQLLTEDISDMQSENRFTTSLLMIPLLEIHDNRCNLIPEKQDINSTNKTYTLTK 295


>X13294-1|CAA31656.1|  746|Homo sapiens protein ( Human mRNA for
           myb-related gene A-myb 5'-region. ).
          Length = 746

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 89  THLNQEETLNIQNKTNHTTSLLVFPLKSLHTSYVRRYRRFSNFTVTNEYYVLVR 250
           T L  E+  ++Q++   TTSLL+ PL  +H +         +   TN+ Y L +
Sbjct: 639 TQLLTEDISDMQSENRFTTSLLMIPLLEIHDNRCNLIPEKQDINSTNKTYTLTK 692


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,398,322
Number of Sequences: 237096
Number of extensions: 1156710
Number of successful extensions: 1720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)