Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20121
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal line...    28   4.8  
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    28   6.3  

>U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal lineage
           specificationprotein 2 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 101 QEETLNIQNKTNHTTSLLVFPLKSLHTSYVRRYRRFSN 214
           Q+  LN+ N+ N  + L +FP   L T+ +  ++  SN
Sbjct: 103 QQTFLNVGNQQNMISPLTMFPFFGLPTAQLMHFKNMSN 140


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 376 CTFSRKNFEKFEDCHVPRPRIVSEHLRL 293
           CTF RK FE+F +      R++ +H  +
Sbjct: 217 CTFHRKKFEEFFEIRTTYRRVLMDHFEV 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,798
Number of Sequences: 27780
Number of extensions: 224486
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)