Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20120
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    44   2e-05
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.5  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   10.0 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   10.0 

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
 Frame = +3

Query: 237  HIGSCAPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLKSKDIYRTEPDKIKF 413
            HI   + IFG+PL ++V  S   +D+GLP+VV   I+YL++    K + IYR        
Sbjct: 1055 HIVRKSGIFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEKEEGIYRLSGSASTI 1114

Query: 414  QQLRKLFTDRGPTFPY-----HWDVPVACAMLKAFI 506
            + L++ F + G  +        +DV V   +LK ++
Sbjct: 1115 KHLKEQFNE-GVDYDLLSSDEEFDVHVIAGLLKLYL 1149


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = +3

Query: 261  FGVPLQQSVERSRCHDDTG-------LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 419
            FGVPL+  VER+      G       +P  + +++  ++   +    ++R   +  + ++
Sbjct: 835  FGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLKE 894

Query: 420  LRKLFTDRGPTFPYHWDVPV-ACAMLKAFI 506
            L  +      +  Y  + P+   A+LK F+
Sbjct: 895  LSDMLDVSPDSIDYEQETPIQLAALLKKFL 924


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 306 DDTGLPLVVR-DSIDYLQAHGLKSKDI--YRTEPDKIKFQQL 422
           +DT LP   +   +DY +A  + +K+I  +R   DK+KFQQL
Sbjct: 86  EDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQL 127


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 279 QSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYR 389
           +S+E     + + LP V+   +  + AHGL+ + IYR
Sbjct: 780 RSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYR 816


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 442 EGLHSRITGTFLSLALCSKL-LSGTPGIDLTQELHGQFEQATAIAEPQREATMTNLINKL 618
           +GLHSRIT T +   + S L   G   +++  +  G      +  E   E   T  +  +
Sbjct: 350 KGLHSRITMTEMRRRVASMLEYIGHIQVEMAAQSAGNQSSTKSSKEGPEEEKET--LRMV 407

Query: 619 PNCNHNLLAWLMR 657
            N   +LL W  R
Sbjct: 408 DNLTRDLLHWEQR 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,614
Number of Sequences: 5004
Number of extensions: 42568
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)