Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20120
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561...    46   3e-05
11_01_0477 - 3688357-3690042                                           29   3.4  
02_03_0091 + 15112390-15112396,15113469-15113962                       28   7.8  

>07_03_0413 +
           17854787-17854847,17855362-17855606,17856127-17856189,
           17856276-17856294,17856547-17856645,17856725-17856802,
           17856891-17857135,17857796-17857952,17858161-17858303
          Length = 369

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 258 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 437
           +FGVP++ +V+R +      +PLV+    DYL   GL ++ ++++E +K   QQL  L+ 
Sbjct: 130 VFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQLVSLYN 187

Query: 438 -DRGPTFPYHWDVPVACAMLKAFI 506
            D G  FP   +     A++K ++
Sbjct: 188 EDSGAPFPDGVNPIDVAALIKCYL 211


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 372 ILIRVPVSNRCCLGRPAADRCRHGN 298
           +L  V VS RCC GR  A +C H +
Sbjct: 295 VLKLVDVSPRCCCGRRGATQCDHSS 319


>02_03_0091 + 15112390-15112396,15113469-15113962
          Length = 166

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 PLQQSVERSRCHDDTGLPLVVRDSI 344
           PL   +  +  HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,346
Number of Sequences: 37544
Number of extensions: 291720
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)