Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20120
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   7e-07
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)                      40   0.002
SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)                36   0.030
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      31   0.64 
SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   2.6  
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   2.6  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.4  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 25/84 (29%), Positives = 47/84 (55%)
 Frame = +3

Query: 255 PIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 434
           PIFG+PL+++V++S   D   LP + R+ I Y++ +GL  + IYR    K K   L++L+
Sbjct: 97  PIFGIPLEKAVKQSILPDGVELPRLFREGIMYVEENGLNVEGIYRVSGVKSKVDALKELY 156

Query: 435 TDRGPTFPYHWDVPVACAMLKAFI 506
                     ++  V  +++K ++
Sbjct: 157 DQGKQVDLKEYEPEVVASIVKQYL 180



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 484 ALCSKLLSGTPGIDLTQELHGQFEQATAIAEPQREATMTN-LINKLPNCNHNLLAWLMRH 660
           ++  + L   P   LT  L  +F +   I + + +   T  L+ +LP+ N  LLAW M H
Sbjct: 174 SIVKQYLRELPESVLTMMLAPRFNELIGIQDKKEQLEKTKQLLAELPSPNRTLLAWTMVH 233

Query: 661 FQHVV 675
             HV+
Sbjct: 234 MGHVI 238


>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 367

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/82 (31%), Positives = 40/82 (48%)
 Frame = +3

Query: 261 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 440
           FGVPL++ V +SR  D + +P V+   + YL   GLK + I+R   +    + L+  F  
Sbjct: 176 FGVPLEE-VTKSR--DGSPIPWVLAKIVHYLSQCGLKHEGIFRVSGNHKVVESLKATFDR 232

Query: 441 RGPTFPYHWDVPVACAMLKAFI 506
            G       DV     +LK F+
Sbjct: 233 DGDADLEECDVMAVAGLLKLFL 254


>SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)
          Length = 252

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 484 ALCSKLLSGTPGIDLTQELHGQFEQATAIAEP-QREATMTNLINKLPNCNHNLLAWLMRH 660
           +L  + L   P   +T EL+  F +A    +P +R   +  LIN+LP+ N+  L  L+ H
Sbjct: 44  SLLKQFLRKLPEGLVTAELYESFIEANRKDDPVERMGALKMLINELPDHNYETLRHLLTH 103

Query: 661 FQHV 672
            +HV
Sbjct: 104 LKHV 107


>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 318 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 434
           +P +V  +I++L+ +GL    I+RT   K + +Q+R+ F
Sbjct: 406 VPTIVNQAIEHLENYGLHVLGIFRTGGSKKRMKQMREQF 444


>SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 258 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 437
           +FG  L ++V+         +P+VV   I+Y++ +GL+ + ++R  P   K     K   
Sbjct: 97  MFGGDLCETVKFEARKGGGFVPIVVDVCIEYIKKYGLEEEGLFRL-PGNAKHISTLKAQF 155

Query: 438 DRG--PTFPYHWDVPVACAMLKAFI 506
           +RG  P      D+    ++LK ++
Sbjct: 156 NRGESPELSDEKDIHTVASLLKLYL 180


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 580  QREATMTNLINKLPNCNHNLLAWLMRHFQHVV 675
            +R   M+ L++ LP+ N + L +++ H +HV+
Sbjct: 1041 ERRQVMSELLSGLPDPNRHTLVFILNHLRHVM 1072



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 306  DDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 440
            + + +PL+VR  +  ++  GL+S  +YR   +  + ++LR  F +
Sbjct: 940  EQSSVPLLVRKCVLEIEKRGLESVGLYRISGNARRKKELRGFFDE 984


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 258 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 437
           +FGVP+   ++RS       LP  +  +I+YLQ   ++S  I+R    K +   L+ +  
Sbjct: 300 VFGVPMSVVLQRS----GQPLPRPILCAINYLQRTCVESVGIFRKSGGKQRINNLKDMME 355

Query: 438 D 440
           D
Sbjct: 356 D 356


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 335  RQHRLLTGTRIKI*RYIPDRTG*DKVSTTEEAVHGSRAYI 454
            R  R+LTG+R+ I R  PD    DK+S T+  +H  RA I
Sbjct: 1386 RDGRMLTGSRVAIGRQEPDCESHDKMS-TKCHLHVQRALI 1424


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 314 GVVMATRALHRLLQWYTEYRSATPNVKISS 225
           GVV A   +  LL+ +T +R ATP ++++S
Sbjct: 137 GVVWAVSLIEGLLRTFTVFRVATPYIRLAS 166


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 515  GVPDKSFEHSASDRNVPVIRECRPSIREQLPQLLKLYLIRFGPVY 381
            GV  K  +H  S  ++    +C  S++ +    ++ Y+ +FGPVY
Sbjct: 1004 GVMMKELQHVKSAESL----QCNDSVKVKTKDYIRSYMKKFGPVY 1044


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,839
Number of Sequences: 59808
Number of extensions: 344856
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)