Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20120
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61530.2 68418.m07721 small G protein family protein / RhoGAP... 36 0.019
At5g61530.1 68418.m07720 small G protein family protein / RhoGAP... 36 0.019
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 29 2.1
At5g64750.1 68418.m08142 AP2 domain-containing transcription fac... 28 6.6
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 28 6.6
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ... 28 6.6
At3g09940.1 68416.m01190 monodehydroascorbate reductase, putativ... 28 6.6
At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family pr... 27 8.7
>At5g61530.2 68418.m07721 small G protein family protein / RhoGAP
family protein contains Pfam domain, PF00620: RhoGAP
domain
Length = 367
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 437
+FGV ++ +V+R +PL++ DYL GL S ++++ E D+ QQL +
Sbjct: 136 VFGVAIEITVQRQE--SSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYN 193
Query: 438 -DRGPTFPYHWDVPVACAMLKAFI 506
D + P + A+LK ++
Sbjct: 194 QDPRASIPEGVNPVDVAALLKYYL 217
>At5g61530.1 68418.m07720 small G protein family protein / RhoGAP
family protein contains Pfam domain, PF00620: RhoGAP
domain
Length = 376
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 437
+FGV ++ +V+R +PL++ DYL GL S ++++ E D+ QQL +
Sbjct: 136 VFGVAIEITVQRQE--SSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYN 193
Query: 438 -DRGPTFPYHWDVPVACAMLKAFI 506
D + P + A+LK ++
Sbjct: 194 QDPRASIPEGVNPVDVAALLKYYL 217
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 271 HCNSLWSALVAMTTPVCRWSSETASITYRHTD 366
HC W L T P+CR S T+++ Y H++
Sbjct: 233 HCIDTW-LLSNSTCPLCRRSLSTSNVCYNHSE 263
>At5g64750.1 68418.m08142 AP2 domain-containing transcription
factor, putative contains similarity to transcription
factor
Length = 391
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 663 EMSHQPSQQIVVTVRQLIDEVRHRRFPLRFGYSGG 559
EM+ Q QQ +Q +D FPLRFG++GG
Sbjct: 303 EMARQ-QQQFQQHHQQSLDLYDQMSFPLRFGHTGG 336
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 376 KIYTGPNRIR*SFNN*GSCSRIEGLHSRIT---GTFLSLALCSKLLS-GTPGIDLTQELH 543
K ++ N+I N S S E + S + ++LS L + LS G P D +
Sbjct: 642 KFFSIWNQIMERLNGRESVSTFEFIESGVVKSLASYLSNGLYQRKLSKGGPECDSLPFIG 701
Query: 544 GQFEQATAIAEPQREATMTNLINKLPN 624
+FE T + EAT + LI KL N
Sbjct: 702 KRFEVFTRLLWSDGEATSSLLIQKLQN 728
>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 506
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 287 HRLLQWYTEYRSATPNVKI 231
HRLLQWYTE +P+ I
Sbjct: 53 HRLLQWYTELLRLSPSQTI 71
>At3g09940.1 68416.m01190 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase (NADH)
GB:JU0182 (Cucumis sativus)
Length = 441
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 385 YISLDFNPCACK*SMLSRTTSGRPVSSWQRERSTDCCSGTPNIGAQL 245
YI L+ NP + + T + +W +E+ D GT + A L
Sbjct: 55 YIDLEVNPTLANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADL 101
>At5g37290.1 68418.m04479 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 180
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 508 GTPGIDLTQELHGQFEQATAIAEPQREATMTNLIN 612
GTP + QEL QF+ AT E +E + NL N
Sbjct: 16 GTPRLQYLQELVSQFQNAT--DEETKERIVANLAN 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,891
Number of Sequences: 28952
Number of extensions: 226319
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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