Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20119
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   3.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.6  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 383
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 144 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 19
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 393 LQNSRLVFHHHERILYSPF*AQRL*LI 313
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  NLSNVLKNGNDNFTARMFTEVV 141
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 358 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKP 254
           TY+   I SS+ L+   S L++++S  +ASSS  P
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSP 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,637
Number of Sequences: 5004
Number of extensions: 46833
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)