Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20119
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      49   3e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      45   5e-05
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      37   0.011
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   2.2  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   2.9  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   3.9  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   6.7  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   8.9  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 246 ESYGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 425
           +++ FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++
Sbjct: 58  KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117

Query: 426 QNIDFSKNTVAAK-SINDWVEENTNNRIK 509
             +D+ KN+  A+ ++N WVE+ T ++IK
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQKTKDKIK 146



 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFD 601
           +L+     +  T   LVNA+YFKG+W   F+
Sbjct: 147 NLIPEGMFNKDTILCLVNAVYFKGSWMKHFN 177


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 330 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRI 506
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   I
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNI 113

Query: 507 K 509
           K
Sbjct: 114 K 114



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDE 604
           +L+    ++S T  ++VNA+YFKG W  +F E
Sbjct: 115 ELIPHGVINSLTRLIIVNAVYFKGVWKKEFGE 146


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 330 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 506
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
           DL+ P   +  T   LVNAIYFKG W   F
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/86 (24%), Positives = 42/86 (48%)
 Frame = +3

Query: 240 AFESYGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 419
           AF  + F  DD +  E  S+++D  +++    K    +      K +E+  + S  +F+ 
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473

Query: 420 DVQNIDFSKNTVAAKSINDWVEENTN 497
           + +N+DFS +     ++ DW+ E  N
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLEVEN 499


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 382 RILQSFPGTSSIRTSKTLISRRIQSQLS 465
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 58  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 225
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 66  CHCRDGDSKQTNDCL 22
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRFSL 152
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 365  WWKTRREFCSRFQGRLQFGRPK 430
            W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 223 HQKLKLTEREEAAPKMPRGQRF 158
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 118 ARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAMAS 261
           +R   +   +N GK+V L      PP+AQ  + S   T +++LKA A+
Sbjct: 481 SRFGVQYYNSNNGKNVALVK---QPPVAQTTVPSQETTAQQMLKAAAA 525


>SB_12449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = -1

Query: 440 EINVLDVRIEDVPGNDCKILV*FSTIMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVR 261
           EI   D RI +  G+DC++      I N      F     N  K+    R FC++S+VV 
Sbjct: 374 EIITDDQRIAETSGDDCRVNP--KEISNEKVEVLFHETTKNFDKLPIQYRGFCAWSLVVF 431

Query: 260 EAIAFKSSSWVSPSEAKAN 204
           + +   S+  +     K N
Sbjct: 432 DRLLITSNPAIGVLTYKDN 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,996
Number of Sequences: 59808
Number of extensions: 346210
Number of successful extensions: 1041
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)