Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20119
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 53 1e-07
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 53 1e-07
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 53 1e-07
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 53 1e-07
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 53 1e-07
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 53 1e-07
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 49 3e-06
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 49 3e-06
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 46 3e-05
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 46 3e-05
AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or cys... 43 1e-04
AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin prote... 43 1e-04
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 42 5e-04
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 42 5e-04
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical pr... 29 3.4
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 28 4.5
Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical p... 28 5.9
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 28 5.9
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 27 7.9
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 7.9
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A++IN++V ENT + IK
Sbjct: 121 NKEATAEAINNFVRENTGDHIK 142
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++ DS++S AVL NA+YFK W +KF
Sbjct: 144 IIGSDSINSDLVAVLTNALYFKADWQNKF 172
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 324 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNR 503
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE +TN +
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNGK 136
Query: 504 IK 509
IK
Sbjct: 137 IK 138
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
DL+ DS ++A A LVNA+YFK W SKF
Sbjct: 139 DLIPADSANNAFA-FLVNAMYFKADWQSKF 167
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +3
Query: 324 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNR 503
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE +TN +
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNGK 136
Query: 504 IK 509
IK
Sbjct: 137 IK 138
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
DL+ DS ++A A LVNA+YFK W SKF
Sbjct: 139 DLIPADSANNAFA-FLVNAMYFKADWQSKF 167
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A + IN +V TN +IK
Sbjct: 120 -TPAAVQEINSFVNTATNGKIK 140
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFD 601
++ DS+ A A +L+N+IYFK W KFD
Sbjct: 141 NIATQDSIKDAIA-LLINSIYFKADWDDKFD 170
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 443
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 444 KNTVAAKSINDWVEENTNNRIK 509
A + IN +V TN +IK
Sbjct: 120 -TPAAVQEINSFVNTATNGKIK 140
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFD 601
++ DS+ A A +L+N+IYFK W KFD
Sbjct: 141 NIATQDSIKDAIA-LLINSIYFKADWDDKFD 170
>AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 315 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENT 494
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E+T
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISEST 143
Query: 495 NNRI 506
+I
Sbjct: 144 KGKI 147
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDE 604
D++ PD+L A +L+NAI+F+G W KF E
Sbjct: 149 DMIKPDNLKDVDA-ILINAIFFQGDWRRKFGE 179
>AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin protein
1 protein.
Length = 366
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 315 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENT 494
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E+T
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISEST 143
Query: 495 NNRI 506
+I
Sbjct: 144 KGKI 147
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 509 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDE 604
D++ PD+L A +L+NAI+F+G W KF E
Sbjct: 149 DMIKPDNLKDVDA-ILINAIFFQGDWRRKFGE 179
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++NPDS+S AVL NA YFK W +KF
Sbjct: 153 IINPDSISEELVAVLTNAFYFKANWQTKF 181
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 512 LVNPDSLSSATAAVLVNAIYFKGAWSSKF 598
++NPDS+S AVL NA YFK W +KF
Sbjct: 153 IINPDSISEELVAVLTNAFYFKANWQTKF 181
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 31.1 bits (67), Expect = 0.64
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -1
Query: 488 FFYPIVNRLSCDCILREINVLDVRIEDVPGNDCKILV*FSTIMNVYFIRHFKLNA----- 324
+++PIV C++ + V + + + +D V F N+Y + +
Sbjct: 268 YYFPIVTVFQFICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNIYMTMSYNCDVATDSY 327
Query: 323 FN*SKITAFTREFCSYSIVVREAIAFKSSSWVS 225
FN K+ FT+ +I+ + +K S W S
Sbjct: 328 FNFFKVNPFTKSTYKNNIIFQILFRWKGSVWKS 360
>Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical
protein F36F2.2 protein.
Length = 290
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 244 KALHGFHHQKLKLTEREEAAPKMPRGQRFSL 152
K L H ++ T EE+ P P+GQRF L
Sbjct: 163 KGLEEVHEIEVDKTVIEESIPNQPKGQRFDL 193
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 55 AAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETH 234
A A ++ V++N D + R+ T VV + S V++A S+ L +A G TH
Sbjct: 1202 ATSALDSDSEKVVQNALDTASERLSTVVVAHR--LSTVVNADSIAV-LKNGKVAEQG-TH 1257
Query: 235 EELLKAMASLTTMLYEQNSRVKAVI 309
EELL+ + ++ +Q +V+ +I
Sbjct: 1258 EELLRKRSIYWRLVQKQGIQVETLI 1282
>Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical
protein F20D1.7 protein.
Length = 695
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 46 IAIAAMAAVTNLSNVLKN-GNDNFTARMFTEVV-KNNPGKSVVLSAFSVLPPLAQLALAS 219
+A+ ++ + N+L+N G D+ R V+ +NN KS+ + F +P L L L+
Sbjct: 124 MALTSLLELDLSDNMLENLGADSIHIRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSG 183
Query: 220 DGET 231
+ T
Sbjct: 184 NNMT 187
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 512 NLNAVIGIFFYPIVNRLSCDCILREINVLDVRIEDVPGNDCKILV*FSTIMNVYFIRHFK 333
N+N + IFF I N LS + ++ + + +++ + PG K+ N+ F +
Sbjct: 376 NINCALLIFFLFISNFLSSNFLVNKDAIQEIKFRNTPGQLSKVSSLDGVTPNMSFDDAAR 435
Query: 332 LNAF 321
LN +
Sbjct: 436 LNKY 439
>Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical
protein F54B8.16 protein.
Length = 279
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 137 TSVNILAVKLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFV 12
TSV + +K +F F+ TLERF++ N++ I F ++
Sbjct: 87 TSVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYWI 128
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 196 LAQLALASDGETHEELLKAMASLTTMLYEQNSRVKAVIFDQLKALSLK 339
+AQ+A+ + +ELL+ + LT YE++S + +V Q+ AL LK
Sbjct: 911 IAQVAMKDFTKAEKELLRLESLLTKKQYERHSLLHSVKLGQI-ALPLK 957
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -3
Query: 135 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 16
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 130 TEVVKNNPGKSVVLSAFSVLPPLAQLAL 213
T ++KN P KS V +F++ P QLA+
Sbjct: 674 TTIIKNVPSKSDVFVSFTIPPAGTQLAM 701
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -3
Query: 135 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 16
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,991
Number of Sequences: 27780
Number of extensions: 257213
Number of successful extensions: 762
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -