Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20118
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    29   0.40 
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.0  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   6.5  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.5  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   6.5  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   6.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.7  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.7  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   8.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   8.7  

>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 28  VLARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDG-RSPQLLPPIGKAEIGFSGTPASL 204
           VL +D++ G+NA +  G K +++ S    +  + +G ++P++ P   K E     T ++L
Sbjct: 121 VLNKDVNNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSAL 180

Query: 205 RSPTESKAR 231
                SK +
Sbjct: 181 PKKEASKKK 189


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 279 SVRADKKKHSDAEEQETIS-HYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINVHP 455
           ++R  K KH D +   T+  + L+ +    +  ++E   +     +L  + + NA+   P
Sbjct: 436 AMRPPKSKHIDDDLSSTVHINSLSGSAGTSDFGLVEETTESASAYFLEARRRRNAVRKDP 495

Query: 456 KLS 464
           KLS
Sbjct: 496 KLS 498


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 88  SSRS-SNTPIQSKTSDGRSPQLLPPIGKA 171
           SSR+ SN P       GRS   LPP+G A
Sbjct: 381 SSRAVSNPPAPPPAIPGRSAPALPPLGNA 409


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
          subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 2  GTSGTRHGRFWHVICL 49
          G S T+HGR W + CL
Sbjct: 45 GASKTKHGRPWSISCL 60


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 555 LSRILFVDF*NIHNIC 508
           LS IL VDF N HNIC
Sbjct: 427 LSNILKVDFQNGHNIC 442


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 262 IDCLERNQRGIELYSQSGTSTKPECLRNQFLPSQLVVEVEEIV 134
           ID LE+++  +EL   S  S   EC+ N+  P    + ++ ++
Sbjct: 247 IDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLI 289


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 148 LLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPNS 258
           L+  I +A  G    P  L + T+SKAR H  C  +S
Sbjct: 216 LVTLIMRAYDGALSAPGQLYTVTDSKARVHLECFGSS 252


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 438 HYSSSSCATTSLRHLAAPIPIYMFPNNPYSDSGND*LFP 322
           +YSS S    S+  +      Y  PN  +SD+ ND  FP
Sbjct: 32  NYSSPSF-NDSVNSVNDEFQTYQLPNGEFSDNMNDLYFP 69


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 468 NRPSASHDHSRTTNKCYGYFKNLQRGSERAHGA 566
           N    +HD S       GY KN  R S+RA+ A
Sbjct: 257 NAAELAHDFSIAQETSLGYIKNDTRPSKRANRA 289


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 251 GTQPAWNRALLSVGDLNEAGVPEKPISAFPIG 156
           GT+    R + S+G +NE    EKP +  P+G
Sbjct: 553 GTENQSPRPVTSLGFVNETFFEEKPKAPLPLG 584


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 281 CTCRQEETFRCRRTGN 328
           C C Q+ET RC +  N
Sbjct: 299 CKCLQKETIRCNKKSN 314


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 261 LTVWNATSVESSFTLSR 211
           L  WNATSVE  F L R
Sbjct: 61  LKKWNATSVERRFQLKR 77


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 181 NQFLPSQLVVEVEEIVHPMS*TGSEYYYFWNC 86
           N + P+ L+++ + I HP+  T  E  + W C
Sbjct: 105 NYWQPAMLILDSKSI-HPLPLTDGEVLHRWEC 135


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 85  DSSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGT 192
           +++  S + IQ KT+D     L+  +GK E    GT
Sbjct: 630 ENANYSRSLIQKKTTDETVGSLIEKVGKLEYEVQGT 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,168
Number of Sequences: 5004
Number of extensions: 65707
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)