Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20118
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 31 0.94
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 31 0.94
08_02_0487 + 17691963-17692048,17693337-17693448,17694128-176943... 29 2.2
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 29 3.8
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 28 5.0
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667... 28 5.0
04_03_0984 - 21432119-21432157,21432722-21434068 28 5.0
01_05_0096 + 18073573-18073839,18073890-18074294 28 6.7
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 27 8.8
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 390 PQDVVEKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTTNKCYGYFKNLQR 542
P V++K+L K N N KL ++R AS DH+ CY K++++
Sbjct: 397 PSYVIQKFLDAKRIYNLTNYLEKL-HDRGLASKDHTTLLLNCYTKLKDVEK 446
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 34 ARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQL--LPPIGKAEIGFSGTPASLR 207
A D NAG+ D+ SS ++++ ++ S G SP+L LPP+ + G P R
Sbjct: 194 AMDYRYVGNAGIGRMDEKSSETTSSGDEASRSTGGSPELRPLPPLLARQCG----PMGAR 249
Query: 208 SP 213
SP
Sbjct: 250 SP 251
>08_02_0487 +
17691963-17692048,17693337-17693448,17694128-17694314,
17694848-17695347,17695480-17695593,17696065-17696220,
17696306-17696395
Length = 414
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 255 QSIYMDWNSVRADKKKHSDAEEQETISH-YLNRNKDYLETYILESVPQDVVEKWLHMKMK 431
QSI +D N R D++K + ++ +S +L+ + D T+ L+S D W++ +K
Sbjct: 180 QSIKLDINWFRLDREKFRSSIDKLLLSRDHLDASMD---TFQLDSFAVDRAGSWINHAIK 236
Query: 432 NNA 440
+NA
Sbjct: 237 HNA 239
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 31 LARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRS 210
+A + S+A A +S + P + SP ++PP A+ G+P+ S
Sbjct: 45 VAAAAAAASSAAAAAAQAQASSEGSPPASELSPGSLSPVMIPPPRHADHLAPGSPSPAAS 104
Query: 211 PTE 219
P+E
Sbjct: 105 PSE 107
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +3
Query: 246 RSKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEKWLHMK 425
R+ +S + N+++ + +H + T+ L+ N D + +LE + ++ WLH
Sbjct: 761 RAARSFMSECNALK--RIRHRNLVRIITVCDSLDNNGDEFKALVLEFISNGNLDTWLHPS 818
Query: 426 MKNNA 440
+N +
Sbjct: 819 TENTS 823
>04_04_0839 -
28565732-28565908,28566380-28566544,28566656-28566788,
28566888-28567007,28568361-28568740
Length = 324
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 290 RQEETFRCRRTGNNQSLPESE*GLFGNIYIGIGAARCRREVVAHEDEE*C 439
RQ ++ RRT + E G FG I G + +V+A ED E C
Sbjct: 220 RQIPRYKFRRTDEPEKQTADETGPFGGIMTECGTNQPIEKVLAPEDAECC 269
>04_03_0984 - 21432119-21432157,21432722-21434068
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 157 PIGKAEIGFSGTPASLRSPTESKARFHAGCVPNSQYTWTGIL 282
P+ GF + LR RF AGC PN ++ + GIL
Sbjct: 244 PVSLRITGFGASADELRETEARLRRFAAGC-PNLRFEFEGIL 284
>01_05_0096 + 18073573-18073839,18073890-18074294
Length = 223
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 267 MDWNSVRADKKKHSDAEEQETISHYLNR 350
+DW+ + A+ KK + EE +T + +NR
Sbjct: 142 VDWDKLEAEVKKEEEEEEVDTATPVVNR 169
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 107 LRSSLRHRMDDLLNFYHQLGRQKLVSQAL 193
L+ +R R+D L F+H L +L +Q L
Sbjct: 710 LKLEVRDRVDQLFKFFHNLSSMRLRNQTL 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,076,865
Number of Sequences: 37544
Number of extensions: 431038
Number of successful extensions: 1306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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