Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20118
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  31   0.97 
SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)                      31   0.97 
SB_15119| Best HMM Match : BAP (HMM E-Value=3.5)                       31   0.97 
SB_46541| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       29   2.2  
SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)                   29   2.9  
SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7)                      29   2.9  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               29   3.9  
SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)               28   6.8  
SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)                    27   9.0  
SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   9.0  

>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 56  AMRALRMEIRTVP-EVVILRSSLRHRMDDLLNFYHQLGRQKLVSQALR 196
           A++ L +E +T   ++++L     HR  + +N+ H LGRQKL+  A R
Sbjct: 317 AIKELAIEEQTGSNDIIVLNVFSLHRPVEDINYRHGLGRQKLLFHASR 364


>SB_38116| Best HMM Match : APC8 (HMM E-Value=3.3)
          Length = 326

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 22/58 (37%), Positives = 27/58 (46%)
 Frame = +1

Query: 1   RHERHETRTVLARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQLLPPIGKAE 174
           + ER  T T+   D++    +G      DSS   NTP     SD R  Q LPPIG  E
Sbjct: 15  QEERQYTFTITEADVTR-PRSGPRLRSLDSS---NTPHSKSESDLRRYQALPPIGSQE 68


>SB_15119| Best HMM Match : BAP (HMM E-Value=3.5)
          Length = 418

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 339 YLNRNKDYL--ETYILESVPQDVVEKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTTNK 512
           Y N+ K +L  E YIL+   Q+VVE W       N +N   K+S        D     NK
Sbjct: 202 YYNQVKIHLNAERYILDKQVQNVVEGWA------NKVNTEKKISVKPNCLDGDKHANINK 255

Query: 513 C-YGY 524
           C Y Y
Sbjct: 256 CLYKY 260


>SB_46541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 591 RDAFGKLPKHRVLSRILFVDF*N--IHNICLSYASGHGSL-MAYCMIIWD 451
           R    KL KH++L  + F    N   HN C +Y+SG   L  AYC    D
Sbjct: 26  RSGKAKLSKHQILLTMSFERGLNKQAHNTCRNYSSGDSPLDHAYCYTFVD 75


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +3

Query: 288 ADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINVHPKLSY 467
           +DK     A+ QET SH  +  ++ +  +++   PQ   +K+     +N  +   P  + 
Sbjct: 28  SDKNPEQPADSQETCSHCTSFRENKVNPHLVRH-PQK-SKKYHKFSKENLGVAYAPNATP 85

Query: 468 NRPSASHDHSRTTN 509
           N+   +H ++  TN
Sbjct: 86  NKNKVTHKNTEETN 99


>SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)
          Length = 781

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +1

Query: 91  SRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPNSQYTW 270
           S+   T  +S   DG  PQ +     +E G SG  ++  +  ++  R   G  P  Q T 
Sbjct: 39  SKLQTTIEESWHEDGSGPQEVSRFQVSESGSSGDESADENQPKTSKRPRIGASPVGQETA 98

Query: 271 TGILYVPTRRNIQMPKNRKQS 333
             +   PT ++   P   K S
Sbjct: 99  ARVSDQPTDKSAASPSGGKTS 119


>SB_12074| Best HMM Match : APC8 (HMM E-Value=0.7)
          Length = 326

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +1

Query: 97  SSNTPIQSKTSDGRSPQLLPPIGKAE 174
           SSNTP     SD R  Q LPPIG  E
Sbjct: 43  SSNTPHSKSESDLRRYQALPPIGCQE 68


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
 Frame = +1

Query: 19  TRTVLARDMSEGSNAGLAYGDKDSSRSS----NTPIQSKTSDGRSPQ--LLPPIGKAEIG 180
           TR+V   D++  ++  L   D + ++SS    +TP +++  D   PQ  +   IGKA+  
Sbjct: 558 TRSVSLPDLTMATSRALI-SDGEQAKSSKLLLDTPKRNQV-DAAEPQSNINKEIGKAKTT 615

Query: 181 FSGTPASLRSPTESKARFHAGCV 249
            S  PAS  SPT    +    C+
Sbjct: 616 KSRQPASAISPTPKSEKDRTRCI 638


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 156 W*KLRRSSIRCLRLDRSITTSGTVLISIRKARIAPFRHITCQNRPCLVPLVP 1
           W K  R+  R    D + + S +  ISI     +   H+   ++PC  P +P
Sbjct: 99  WLKQNRAKNRAQLRDLAPSASESAAISIHTGSFSSHDHLAAADQPCPSPSIP 150


>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 327 TISHYLNRNKDYLETYILESVPQDVVEKWLHMK 425
           TI H  N+N+      I+ SV + V E WL  +
Sbjct: 476 TIVHVTNKNRPVTHATIITSVMEKVAESWLESR 508


>SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 1   RHERHETRTVLARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGR----SPQLLPPIGK 168
           RH R  +   +   ++   N  L   + DS+RSS++ + S +SD       P  LP + +
Sbjct: 56  RHHRSRSSPAIFAGLNSWKNESLMDRNPDSTRSSSSSLSSTSSDKPFKTFRPLELPAMNR 115

Query: 169 AE 174
           AE
Sbjct: 116 AE 117


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 7    ERHETRTVLARDMSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQL 150
            ++HE + +L R   + S+  L   DKD   S   P +S+     S ++
Sbjct: 996  QQHERQDILGRPHQDRSSPKLPSADKDKKDSEGPPGESRDQGSMSQRM 1043


>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
          Length = 521

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 97  SSNTPIQSKT-SDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPNSQYTWT 273
           SS T I+     DG  PQ +     +E G SG  ++  +  ++  R   G  P  Q T  
Sbjct: 188 SSQTTIEETWYEDGSGPQEVSRSQISESGSSGDESADENQPKTSKRPRIGASPVGQKTAA 247

Query: 274 GILYVPTRRNIQMPKNRKQS 333
            +   PT ++   P   K S
Sbjct: 248 RVSDQPTDKSAPSPSGGKTS 267


>SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)
          Length = 268

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 67  LAYGDKDSSRSSNTPIQSKTSDGRSPQLLPPIGKA 171
           L + +K  + S + P    T+DGR    LPPI  A
Sbjct: 63  LDFANKQITASEDRPRTIATTDGRRESYLPPINAA 97


>SB_17862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 330 ISHYLNRNKDYLETYILESVPQDVVEKWLHMK 425
           +  +L  N  +L+  ILE   ++ +E+WL  K
Sbjct: 42  VKEFLGANPSFLDEVILEVASREQIERWLIRK 73


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 106 TPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPNSQYTWTGILY 285
           T + S    G   +  PP  K+  G+ G P++ +S T  K       VP+++   TG   
Sbjct: 282 TGVPSNKMSGTGYKGFPPNKKSGTGYKGVPSNKKSVTGYKG------VPSNKKPGTGYTG 335

Query: 286 VPTRR 300
           VP+ +
Sbjct: 336 VPSNK 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,031,053
Number of Sequences: 59808
Number of extensions: 483615
Number of successful extensions: 1592
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)