Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20118
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical pr... 35 0.052
U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical pr... 32 0.28
AL032657-15|CAA21734.1| 788|Caenorhabditis elegans Hypothetical... 31 0.49
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ... 28 6.0
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 27 7.9
U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated ... 27 7.9
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 27 7.9
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 7.9
U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated ... 27 7.9
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 27 7.9
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 27 7.9
AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like ad... 27 7.9
AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like ad... 27 7.9
AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like ad... 27 7.9
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 27 7.9
AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like ad... 27 7.9
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 7.9
>Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical
protein C41C4.3 protein.
Length = 630
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 165 EGRNWFLRHSGFVEVPD*E*SSIPRWLRSKQSIYMDWNSVRADKKKHSDAEEQETISHYL 344
EG LR GF +V + +SIP W+++ Q ++++ S +D S +E T+ H+L
Sbjct: 292 EGMTRNLRSIGFYDV---KMNSIPNWIKTDQIQFLEFQSSISDNVDMSALDELPTLEHFL 348
>U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical
protein ZK430.7 protein.
Length = 444
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 372 YILESVPQDVVEKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTT 506
Y+L++ QDV K + MKM+ N I+ +P +YN AS D+S T
Sbjct: 219 YVLDT-RQDVPLKKVTMKMRPNKISWNPMEAYNFTVASEDYSLYT 262
>AL032657-15|CAA21734.1| 788|Caenorhabditis elegans Hypothetical
protein Y47H9C.5a protein.
Length = 788
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +3
Query: 330 ISHYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTTN 509
IS YL +DY E L V +D ++ + K AI HP + + P+A HD N
Sbjct: 11 ISCYLVIAEDYYE---LLGVERDADDRTIRKAFKKLAIKKHPDRNTDDPNA-HDEFVKIN 66
Query: 510 KCYGYFKN 533
K Y K+
Sbjct: 67 KAYEVLKD 74
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 450 HPKLSYN-RPSASHDHSRTTNKCYGYFKNL--QRGSERAHGALAACQKRR 590
HP + ++ PS HD RT C+GY ++ R + + L A RR
Sbjct: 404 HPDIQFHFLPSTVHDDGRTNGTCHGYQVHVGPMRSQSKGYIMLQAKDPRR 453
>U23518-2|AAC70884.4| 496|Caenorhabditis elegans Hypothetical
protein F21D12.3 protein.
Length = 496
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 371 CFQIILIPIQVMTDCFLFFGI*MFLLVGTYRIP 273
CF + P+ T L FGI +F G Y P
Sbjct: 222 CFSAVSYPVTTSTSTILSFGIFLFAFSGHYVFP 254
>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
protein F55A12.8 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 345 NRNKDYLETYILESV---PQDVVEKWLHMKMKNNAINVHPKLSYNRP 476
N+ K E ++ ES+ P D +EKWL+ + +A N KL P
Sbjct: 447 NKGKTLHEMHMEESIRYKPGDKIEKWLNRLLCLDATNCQLKLECGTP 493
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 417 HMKMKNNAINVHPKLSYNRPSASHDHSRTTNKCYGYFKNLQRGSERA 557
H K++ +V S++ +S DHS +NK Y +R +E A
Sbjct: 297 HTGNKSDCESVSSSASFSPSHSSEDHSNYSNKSPQYVDRRRRNNEAA 343
>U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated
protein 11, isoform f protein.
Length = 198
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 128 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 164
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 587 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 623
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 516 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 552
>U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated
protein 11, isoform h protein.
Length = 548
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 478 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 514
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 476 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 512
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 464 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 500
>AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 289
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 219 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 255
>AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 456
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 386 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 422
>AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 535
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 465 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 501
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 476 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 512
>AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 548
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 478 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 514
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 284 YRIPVHVY*L-FGTQPAWNRALLSVGDLNEAGVPEKP 177
Y P+ +Y FG QP WN A+ + G G P P
Sbjct: 516 YTAPMGMYQQPFGAQPMWNPAMAAYGQQYGYGQPVPP 552
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,839
Number of Sequences: 27780
Number of extensions: 373060
Number of successful extensions: 1320
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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