Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20118
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 236 WNRALLSVGDLNEAGVPE 183
           WN  L SVG  NE  +P+
Sbjct: 170 WNAGLQSVGISNEVELPQ 187


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +1

Query: 91   SRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHAGCVPN 255
            S  +N P  +K SD + P       KAE G     +       S     + CV N
Sbjct: 870  SHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSN 924


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 449 YVDSIILHLH--VQPLLYDILRHRFQYICFQIIL 354
           Y+  +  +L   V PLLY+I+ ++F+   F+++L
Sbjct: 331 YMSGVFYYLSTTVNPLLYNIMSNKFRE-AFKLML 363


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 511 LFVVREWSWLADGLLYDN 458
           L+V  E  WL D +LY+N
Sbjct: 95  LYVPSEHIWLPDIVLYNN 112


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 172 EIGFSGTPASLRSPTESKARFHAG 243
           E+ +SGT  S     E+K+RF +G
Sbjct: 330 EVPYSGTLISHYEDGETKSRFISG 353


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 511 LFVVREWSWLADGLLYDN 458
           L+V  E  WL D +LY+N
Sbjct: 108 LYVPSENIWLPDIVLYNN 125


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 55  SNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQLLPPI 162
           S AGL    + S  +  TP+  K  D  S   + P+
Sbjct: 242 SVAGLNVSSRRSDMNGTTPLDEKPLDVSSNDKVHPL 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,704
Number of Sequences: 438
Number of extensions: 4265
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)