Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20118
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi... 32 0.34
At2g41750.1 68415.m05161 DTW domain-containing protein contains ... 31 0.60
At5g05750.1 68418.m00633 DNAJ heat shock N-terminal domain-conta... 30 1.0
At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA... 29 3.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 28 4.2
At3g22270.1 68416.m02815 expressed protein 28 5.6
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 5.6
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)... 28 5.6
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 27 7.4
At4g14990.1 68417.m02303 expressed protein 27 7.4
At3g49200.1 68416.m05377 hypothetical protein 27 7.4
At5g43430.1 68418.m05310 electron transfer flavoprotein beta sub... 27 9.7
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel... 27 9.7
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi... 27 9.7
At1g58480.1 68414.m06652 GDSL-motif lipase, putative similar to ... 27 9.7
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 27 9.7
At1g22040.1 68414.m02757 kelch repeat-containing F-box family pr... 27 9.7
>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
Length = 1169
Score = 31.9 bits (69), Expect = 0.34
Identities = 21/105 (20%), Positives = 47/105 (44%)
Frame = +3
Query: 225 SSIPRWLRSKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVV 404
+SI +WLR +Y ++ + + ++ +++ S L +D +E S Q
Sbjct: 748 ASISKWLRQSIKVYDNFEASMEGLRSFFNSVKEQVDSKMLGSQEDSVEKNF-SSEKQSKE 806
Query: 405 EKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTTNKCYGYFKNLQ 539
+ +++N + V PK+ S H +K +GY ++++
Sbjct: 807 FRRKENQIQNKSSQVEPKVEDYTNSNPKYHFMYESKAFGYHRDVK 851
>At2g41750.1 68415.m05161 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 253
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 396 LAAPIPIYMFPNNPYSDSGND*LFPVLRHLNVSSCRHVQNSSPCILTVWNAT 241
L AP IY+FP++P S + + LN+ + R + N P L V++AT
Sbjct: 87 LPAPPTIYLFPSSPSSPAVT---ISEFKSLNLLNHREISNPPPLRLIVFDAT 135
>At5g05750.1 68418.m00633 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 294
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Frame = +3
Query: 276 NSVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINVHP 455
+S S EEQ TI + KDY E L+S VE L + ++ VHP
Sbjct: 87 SSAAGSSSSSSSTEEQRTIVREIKSKKDYYEILGLKS--NCSVED-LRKSYRKLSLKVHP 143
Query: 456 KLSYNRPSASHDHSRTTNKCYGYFKN--LQRGSERAHGALAACQKRRD 593
N+ S + ++ +K + N +R + + A Q RRD
Sbjct: 144 --DKNKAPGSEEAFKSVSKAFQCLSNEDTRRKYDGSGSDEPAYQPRRD 189
>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase
(GA2OX2) identical to GI:4678368 ga2ox2
Length = 341
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 133 GRSPQLLPPIGKAEIGFSGTPASLRS---PTESKARFHAGCVPNSQYTWTGILYVPTRRN 303
G P+L+ + + IGF G P SL++ P E + PN W L +
Sbjct: 61 GVRPELMTRLEQEAIGFFGLPQSLKNRAGPPEPYGYGNKRIGPNGDVGWIEYLLLNANPQ 120
Query: 304 IQMPK 318
+ PK
Sbjct: 121 LSSPK 125
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 219 E*SSIPRWLRSKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVP 392
E SS +W S+ D + D + EE++++ N D L+++++ES+P
Sbjct: 584 EESSNMKWSLEPCSLNSDQSQTTDDNSDNGSNEEKDSVG--TTGNSDVLKSWVIESLP 639
>At3g22270.1 68416.m02815 expressed protein
Length = 782
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 56 AMRALRMEIRTVPEVVILRSSLRHRMDDLLNFYHQLGRQ 172
A L + I+ +LR+SLRH DD N+ GR+
Sbjct: 721 AADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRK 759
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 290 RQEETFRCRRTGNNQSLPES 349
R E+T RC+R NN S+ ES
Sbjct: 234 RPEKTKRCKRNNNNNSIEES 253
>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
family protein contains Pfam profile PF05743: Tumour
susceptibility gene 101 protein (TSG101); similar to
Tumor susceptibility gene 101 protein
(Swiss-Prot:Q99816) [Homo sapiens]
Length = 398
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 384 SVPQDVVEKWLHMKMKNNAINVHPKLSYNRPSASHDHSRTTN 509
SVP + KWL + N I+ +P L S H+ R+ N
Sbjct: 26 SVPYEESNKWLIRQHLLNLISSYPSLEPKTASFMHNDGRSVN 67
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 243 LRSKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEK 410
+ S+ S+Y D+ ++ D EE++ + L K +E Y+LE + VV+K
Sbjct: 106 IASQLSLYSDFEETEVGERDE-DEEEEKKVEDLLKDLKPKIEKYLLEK-KEAVVKK 159
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 56 AMRALRMEIRTVPEVVILRSSLRHRMDDLLNFYHQLGR 169
A L + I+ +LR+SLRH +D NF +GR
Sbjct: 723 AADVLELAIKREMPAELLRASLRHTNEDQRNFLLNVGR 760
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 429 KNNAINVHPKLSY-NRPSASHDHSRTTNKCYGYF 527
K + N P L Y NRPS+ +T+++CY F
Sbjct: 179 KTSNPNELPSLPYQNRPSSGSSSLKTSSRCYSRF 212
>At5g43430.1 68418.m05310 electron transfer flavoprotein beta
subunit family protein contains Pfam profile: PF01012
electron transfer flavoprotein, beta subunit
Length = 251
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 212 RLRVKLDSTLVAFQTVNIHGLEFCTCRQEETFRCRRTG 325
++RVK D T V Q V + FC EE R + G
Sbjct: 16 KIRVKPDKTGVETQNVKMSMNPFCEIALEEALRIKEAG 53
>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC2) identical to
cyclic nucleotide-gated cation channel GI:3894399 from
[Arabidopsis thaliana]
Length = 726
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +1
Query: 43 MSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQL-LPPIGKAEIGFSGTPASLRSPTE 219
+ E SN + GD SS S TP+ S Q+ +P + P S
Sbjct: 26 IDENSNLQINGGDSSSSGSDETPVLSSVECYACTQVGVPAFHSTSCDQAHAPEWRASAGS 85
Query: 220 SKARFHAGCVPNSQYT 267
S G VPN T
Sbjct: 86 SLVPIQEGSVPNPART 101
>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1227
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -3
Query: 435 YSSSSCATTSLRHLAAPIPIYMFPNN 358
YSSS+ ++SLR+L+A I M PNN
Sbjct: 954 YSSSADYSSSLRYLSAMISKGMKPNN 979
>At1g58480.1 68414.m06652 GDSL-motif lipase, putative similar to
family II lipases EXL3 GI:15054386, EXL1 GI:15054382
from [Arabidopsis thaliana]; contains Pfam profile
PF00657: GDSL-like Lipase/Acylhydrolase
Length = 342
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -1
Query: 446 VDSIILHLHVQPLLYDILRHRFQYIC 369
+D +IL+++V L+D+++H +Y C
Sbjct: 262 LDGVILYINVYDTLFDMIQHPKKYGC 287
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 279 SVRADKKKHSDAEEQETISHYLNRNKDYLETYIL--ESVPQDVVEKWLHM 422
S+ + KK D E Q + + +++ + L E Q+V EKW+HM
Sbjct: 242 SIECNSKKAFDGELQNVLKTVVTWDENRRVSVQLSHEEQQQNVTEKWIHM 291
>At1g22040.1 68414.m02757 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 475
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Frame = +1
Query: 76 GDKDSSRSSNTPIQSK-----TSDGRSPQLLPPIGKAEIGFSGTPASLRSPTESKARFHA 240
G D R +P+QS ++D S P KA++ + A L P + +
Sbjct: 234 GGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYN 293
Query: 241 G--CVPNSQYTW 270
G CVP S Y+W
Sbjct: 294 GRLCVPQSLYSW 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,788
Number of Sequences: 28952
Number of extensions: 344094
Number of successful extensions: 1047
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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