Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   8.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   8.3  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 574 CHGQSPAFASVLTEV 530
           CH   PA  SVL E+
Sbjct: 67  CHRMKPALFSVLCEI 81


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 381  YDGYIVSTRISYIQIKRETF 322
            YDG ++   + Y+    ETF
Sbjct: 1176 YDGPLIRGEVHYLNRNEETF 1195


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 381  YDGYIVSTRISYIQIKRETF 322
            YDG ++   + Y+    ETF
Sbjct: 1176 YDGPLIRGEVHYLNRNEETF 1195


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 319 QERFTFDLNIRNSSGNDVPVVTMFSINKVILCNDEIKA 432
           ++R T ++   ++   D+P+  +    K + CND + A
Sbjct: 164 KDRDTSEVESTSNLQADMPLERIIEAEKRVECNDPLVA 201


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 599 WLSYQYSHVPRPIPCLC 549
           W ++ Y H+   + CLC
Sbjct: 206 WHTFGYYHILAMLNCLC 222


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 599 WLSYQYSHVPRPIPCLC 549
           W ++ Y H+   + CLC
Sbjct: 206 WHTFGYYHILAMLNCLC 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,115
Number of Sequences: 336
Number of extensions: 3215
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)