Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.9  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   5.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   6.7  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   6.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.8  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 143 KGFDWRAVVDFGLYNNLEKVEMEVYFEKEI 232
           KGF W A+  FG+++N   ++++ +FEK +
Sbjct: 438 KGF-WYAI-SFGVFSNCFSLQLQSFFEKHL 465


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 251 VMPYLFLFPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSEL 87
           V  ++F FPF   LP +  +  C+ R   +  S+      NIL     D  L+++
Sbjct: 13  VSAFVFHFPFLEALPSKFEIYACLERRATVTQSKARSAYPNILVYTNLDELLADV 67


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +1

Query: 244 GITNTTFVVVRNNWHHII---IRPIGPLQERFTF-----DLNIRNSSGNDVPVVTM 387
           GIT  T   +R N HH +   ++  G +Q   T      +  IR+ S   VPVVT+
Sbjct: 397 GITQDTSPSIRTNCHHCLDDGMQASGIVQSNLTSAAMSNNSAIRSGSAASVPVVTI 452


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 540 LQRSIRYFPGISATYMSISFSTIIFVCYVVGACFLS 433
           L  ++R FPGISA   S      + +  VV A FL+
Sbjct: 301 LLHNLRAFPGISAISSSYLVHIFMILLGVVAAIFLA 336


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 134 RNILYPNRKDYTLSELVRIR--TWYSHFLLNTRKKT*YK*IHIFN 6
           R +  PN++  T+SE + +R  TW    L NT   T ++  HI++
Sbjct: 242 RCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWS 286


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 513 GISATYMSISFSTIIFV-C---YVVGACFLSGLDFIITKNHFVDGEHRYDGYIVST 358
           G+S     I +   +FV C    ++ + F    D + TK HF D +   DG + ST
Sbjct: 410 GVSFLGQGIIYFIFLFVMCASQLIMTSIFGKETDRLSTKEHFTDDKSYIDGVMPST 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,498
Number of Sequences: 5004
Number of extensions: 55596
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)