Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0172 + 18903601-18903661,18903792-18904009                       30   1.3  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    29   3.0  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    29   3.9  
05_05_0018 - 21547649-21547875,21547973-21548187,21548831-215490...    28   5.2  
12_02_1233 + 27224219-27225607                                         27   9.1  
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311...    27   9.1  

>01_05_0172 + 18903601-18903661,18903792-18904009
          Length = 92

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 579 PRATANPLPLLQSLQRSIRYFPGISATYMSISFSTIIFV-----CYVVGACFLSGL 427
           P     P+P L +L   +      S +  S++ S++  +     C+++G CFLSGL
Sbjct: 22  PPPPGTPVPFLVALHLRLAACGAQSTSTSSVAASSVSLLAEPGHCFIIGNCFLSGL 77


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 453 RHNKQI*WWKKICSCMWPKSLENTELTSVRTEAKAGD 563
           RHN++I +WK  CS +W + L  +E+ S       GD
Sbjct: 479 RHNEKIGFWKTNCSELWER-LHISEVPSSAPSDSEGD 514


>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
            30287611-30287920,30288561-30290197
          Length = 1082

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 576  RATANPLPLLQSLQRSIRYFPGISATYMSISF 481
            R  AN     +S+ R +   P  SATYMS+ F
Sbjct: 1051 RGDANAKQAAESILRRLHKMPDYSATYMSVEF 1082


>05_05_0018 -
           21547649-21547875,21547973-21548187,21548831-21549096,
           21549534-21549657,21549946-21550041,21550179-21550294,
           21550374-21550455,21550574-21550728,21550819-21551001,
           21551114-21551305,21551389-21551564,21551676-21551729,
           21552076-21552147,21552255-21552582
          Length = 761

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 617 NTYN*FWLSYQYSHVPRPIPCLCFSPYRGQFGIF--QGFRPHT 495
           N+Y  F+   QY HV   I C  F+ Y   F     +GF  HT
Sbjct: 413 NSYGHFFPDPQYEHVQHIICCDSFATYAYDFNFSHPEGFSRHT 455


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 492 SCMWPKSLENTELTSVRTEAKAGDWPWHVAILIRQPKSVIG 614
           S  WP S     + S RTE +   W W     +R+  + +G
Sbjct: 167 SGQWPPSPLLLHVFSSRTEPEGSTWRWEERSFVREGNATMG 207


>03_02_0895 +
           12230683-12230844,12230937-12230991,12231106-12231169,
           12231292-12231334,12231509-12231607,12231710-12231778,
           12231912-12232245,12232317-12232471,12232592-12233287
          Length = 558

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 176 GLYNNLEKVEMEVY--FEKEIKINKASQI 256
           G+YN LE+ E +VY  F+K + IN    I
Sbjct: 132 GMYNTLEQFENDVYMVFQKAMSINSEDTI 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,051
Number of Sequences: 37544
Number of extensions: 314668
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)