Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)                     28   5.3  
SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31)                   28   7.0  
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)                      28   7.0  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          27   9.3  

>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 973

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +3

Query: 282 LASYNNSSDRPFTRTFHV*SEYTKFEWKRCT---RRNDVLHQQSDSL***NQGQTKNRLL 452
           L S+  ++   F R F   S  TK  W R      +N VLH ++         +    +L
Sbjct: 298 LVSHRATNAEMFERFFEKISGITKNTWSRRIDDLAKNAVLHLKNGE----TDAKPSQFIL 353

Query: 453 RHNKQI*WWKKICSCMWPKSLENTELTSVRTEAKAGDWPWHVAIL 587
           +  ++I    K+   + PK +ENT +   + E  AGDW  H+ ++
Sbjct: 354 KEEREI---SKLAKAL-PK-MENTFILKEQMETHAGDWQAHLKLI 393


>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 974

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 546 EAKAGDWPWHVAILIR 593
           EAKAG WPW  AI ++
Sbjct: 729 EAKAGAWPWLAAIYVK 744


>SB_45323| Best HMM Match : rve (HMM E-Value=5.3e-31)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 339 SEYTKFEWKRCTRRNDVLH 395
           S++T  E+++C R ND+LH
Sbjct: 322 SQFTSDEFQKCLRSNDILH 340


>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 546 EAKAGDWPWHVAILIRQ 596
           EAKAG +PW +A+L ++
Sbjct: 34  EAKAGQFPWQIALLFKR 50


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 65   NTMSLYGPA-LTRYNPCGLGIIYFDNVKGFD 154
            N  SLY P        C LG  Y DN++GFD
Sbjct: 978  NFRSLYHPKRFVTGRICTLGGAYMDNIRGFD 1008


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 504 PKSLENTELTSVRTEAKAGDWPWHVAIL 587
           PK +ENT +   +TE + GDW  H+ ++
Sbjct: 15  PK-MENTFILKEQTETQTGDWQAHLKLI 41


>SB_47099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 YNNLEKVEMEVYFEKEIKINKASQIQPSLL*E 277
           + N  KVE+ VY++K+  +N+     P L  E
Sbjct: 24  FPNRSKVEIHVYYQKDTNLNELKTTVPELFYE 55


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 272 TTTKVVFVMPYLFLFPFRNKLPFQLFLNY 186
           TTT+  +  PY + +P+R   P++ +  Y
Sbjct: 443 TTTRYRYYYPYRYYYPYRYYYPYRYYYPY 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,262,520
Number of Sequences: 59808
Number of extensions: 402847
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)