Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126686-1|BAC86644.1|  130|Homo sapiens protein ( Homo sapiens ...    34   0.35 
U64871-1|AAB49751.1|  415|Homo sapiens GPR19 protein.                  32   1.9  
U55312-1|AAB00316.1|  415|Homo sapiens GPR-NGA protein.                32   1.9  
CR456832-1|CAG33113.1|  415|Homo sapiens GPR19 protein.                32   1.9  

>AK126686-1|BAC86644.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44732 fis, clone BRACE3026161. ).
          Length = 130

 Score = 34.3 bits (75), Expect = 0.35
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 236 FLFPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILY-PNRKDYTLSEL 87
           FL+PF + +PF L   +  V  P +L+  +P  C   LY P++   TL EL
Sbjct: 61  FLYPFAHSVPFFLEKLFAHVFYPPILSFSMPTSCPTPLYFPSKLTQTLGEL 111


>U64871-1|AAB49751.1|  415|Homo sapiens GPR19 protein.
          Length = 415

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 182 IVRNPLLLASQIPLHCRNILYPNRKDYTLSELV-RIRTWYSHFLLNTRKKT*Y 27
           ++ N L L S +P H   + +P+ +DY  S LV    TW S F  +  K T Y
Sbjct: 279 LILNLLFLLSWLPFHVAQLWHPHEQDYKKSSLVFTAITWIS-FSSSASKPTLY 330


>U55312-1|AAB00316.1|  415|Homo sapiens GPR-NGA protein.
          Length = 415

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 182 IVRNPLLLASQIPLHCRNILYPNRKDYTLSELV-RIRTWYSHFLLNTRKKT*Y 27
           ++ N L L S +P H   + +P+ +DY  S LV    TW S F  +  K T Y
Sbjct: 279 LILNLLFLLSWLPFHVAQLWHPHEQDYKKSSLVFTAITWIS-FSSSASKPTLY 330


>CR456832-1|CAG33113.1|  415|Homo sapiens GPR19 protein.
          Length = 415

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 182 IVRNPLLLASQIPLHCRNILYPNRKDYTLSELV-RIRTWYSHFLLNTRKKT*Y 27
           ++ N L L S +P H   + +P+ +DY  S LV    TW S F  +  K T Y
Sbjct: 279 LILNLLFLLSWLPFHVAQLWHPHEQDYKKSSLVFTAITWIS-FSSSASKPTLY 330


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,744,508
Number of Sequences: 237096
Number of extensions: 1699639
Number of successful extensions: 3436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3436
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)