Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016433-3|AAB65390.1|  336|Caenorhabditis elegans Seven tm rece...    31   0.66 
Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical pr...    28   4.7  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    28   6.2  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF016433-3|AAB65390.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 144 protein.
          Length = 336

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +2

Query: 116 LGIIYFDNVKGFD-WRAVVDFGLYNNLEKVEM--EVYFEK-EIKINKASQIQP 262
           LG+I+   +  F  W A V FG++N +EK +   +V FE  E+ I++ S I P
Sbjct: 132 LGLIFIPCIVCFVLWFACVYFGMHNTIEKQQFMRDVMFENYEVDISRESFIAP 184


>Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical
           protein C50C10.2 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 244 GITNTTFVVVRNNWHHII-IRPIG 312
           GI +TTF++ R  W+ I+ IRPIG
Sbjct: 264 GICSTTFLINRPYWYQILFIRPIG 287


>AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical
           protein C04E12.10 protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 432 GLDFIITKNHFVDGEH 385
           GL F++ +NHFV GEH
Sbjct: 142 GLQFVVGQNHFVMGEH 157


>Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical
           protein C53A5.8 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 284 QLFLTTTKVVFVMPYLFLFPFRNKLPFQLF 195
           Q+F  T  VVF++  LFLF F  K  +  +
Sbjct: 24  QMFYGTITVVFMLILLFLFQFSKKFSYSFY 53


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 396  DGEHRYDGYIVSTRISYIQIKRE 328
            +GE R+DGY + T+I Y   K +
Sbjct: 1413 EGEVRFDGYTIKTKIPYYSRKNQ 1435


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 501 WPKSLENTELTSVRTEAKAGDWPWHVAILIRQPKSVIG 614
           W  SL  ++ +   TEA+A + P H+  +I +P   IG
Sbjct: 226 WKNSLSTSDPSISATEAEASEDPEHLDDVITEPAPPIG 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,733
Number of Sequences: 27780
Number of extensions: 303834
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)