Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.5  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 149 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 247
           +D++ +V F L +    +   VY E+  K+N A
Sbjct: 72  WDYKGIVYFELLSPNRTINSVVYIEQLTKLNNA 104


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 368 SFPLEFRIFRSNVKRSCK 315
           S  + +RIF++NVK + K
Sbjct: 514 SSKINYRIFKANVKEAVK 531


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 278 FLTTTKVVFVMPYLFLFP 225
           F TT  V    P+LFL+P
Sbjct: 358 FQTTPTVSVEQPHLFLYP 375


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 149 FDWRAVVDFGLYNNLEKVEMEVYFEKEIKINKA 247
           +D++ +V F L      +   VY E+  K+N A
Sbjct: 194 WDYKGIVYFELLPPNRTINSVVYIEQLTKLNNA 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,354
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)