Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20117
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41960.1 68418.m05109 expressed protein                             31   0.62 
At1g50420.1 68414.m05651 scarecrow-like transcription factor 3 (...    29   3.3  
At1g47765.1 68414.m05312 F-box family protein contains F-box dom...    29   3.3  
At1g01980.1 68414.m00116 FAD-binding domain-containing protein s...    28   4.3  
At3g03480.1 68416.m00346 transferase family protein similar to h...    27   7.6  

>At5g41960.1 68418.m05109 expressed protein 
          Length = 217

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -2

Query: 573 ATANPLPLLQSLQRSIRYFPGISATYMSISFSTIIFVCYVVGACFLSGLDFIITKNHFVD 394
           ++ +PLPL   LQ   +    I        FS    +   +GAC LS   F + K    +
Sbjct: 30  SSPSPLPLAYPLQNPKKLCRKIERVICRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDE 89

Query: 393 GEHRYDGYIVST 358
            E   +  IVST
Sbjct: 90  EEEEENSAIVST 101


>At1g50420.1 68414.m05651 scarecrow-like transcription factor 3
           (SCL3) identical to GB:AAD24404 GI:4580515 from
           [Arabidopsis thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 482

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 209 PFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSELV 84
           P Q+F    + R P LLAS  P HC   L P  +   L  L+
Sbjct: 18  PLQVFSTMSLNR-PTLLASSSPFHCLKDLKPEERGLYLIHLL 58


>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 385

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 245 PYLF-LFPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSELVRIRTW 69
           PY   LF  R+  P  L    C + N  L  S IP H  + L  +++ Y+ S+L  +  W
Sbjct: 60  PYFINLFETRSPRPSLLV---CFIENDKLFVSSIPQHLHS-LQNSKRSYSSSQLFIVIIW 115


>At1g01980.1 68414.m00116 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 541

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -3

Query: 395 MENIVTTGTSFPLEFRIFRSNVKRSCKGPIGRIII*CQLFLTTTKVVFVMPYLFLFPFRN 216
           M  + TT T FP   R+F+     + K P G  +     F+  T+      Y ++ PF  
Sbjct: 417 MSEVATTATPFPHRKRLFKVQHSMNWKDP-GTDVE--SSFMEKTRSF----YSYMAPFVT 469

Query: 215 KLPFQLFLNY 186
           K P   +LNY
Sbjct: 470 KNPRHTYLNY 479


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 230 FPFRNKLPFQLFLNYCIVRNPLLLASQIPLHCRNILYPNRKDYTLSE 90
           FPF  +L F +  +  ++  PLLL     L C   ++  R ++T+++
Sbjct: 132 FPFLEELLFDVEGSSDVLNTPLLLVQVTRLKCCGFIFALRFNHTMTD 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,487
Number of Sequences: 28952
Number of extensions: 276311
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)