Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.44 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 393 AARSNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFN 503
           A +   I V+++GR+LM C +  +G+    +   I N
Sbjct: 183 AIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHN 219


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = -3

Query: 455 LSTVHELSAIDHNVDLITSCSR 390
           + T+   +A++H + ++ +CS+
Sbjct: 316 ICTIMSAAAVEHILSIVNTCSQ 337


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 249 RRIIVFPELCLTNK 290
           RRI +   LCLTNK
Sbjct: 249 RRIEIAHALCLTNK 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,194
Number of Sequences: 336
Number of extensions: 2237
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)