Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   3.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   4.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   5.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   7.3  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    25   9.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.7  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 81  KLHCFDVAFVNXQLNQQMLIVKSVRR 4
           K+HC +  F   Q+NQ ++   S  R
Sbjct: 268 KVHCLNTLFSKLQINQSIIFCNSTNR 293


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 417 VVVNGRELMDCTKNDTG 467
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 417 VVVNGRELMDCTKNDTG 467
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 VVPVYGSLKRYPIPAIHPDLYDNILVXI 386
           ++P++ S KR+     +P L+DN  V I
Sbjct: 139 IIPIFKSKKRFMTSHNNPSLHDNFSVRI 166


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 RSNQIYVVVNGRELMDCTKNDTGE 470
           + N I +V +GR+LM C +  +G+
Sbjct: 196 QKNSIPIVTSGRDLMACAQTGSGK 219


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 291 TTAFVVPVYGSLKRYPIPAIHPDLYDNILV 380
           T+   +PV   L +Y +  I PDLYD + V
Sbjct: 231 TSLLQIPV-SQLSQYSVIFIVPDLYDRVYV 259


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 48  NLQKLHQNNEAYFLRIINILAGESYFTKI 134
           +L+K+ +NNEA  ++I    A ES+  KI
Sbjct: 117 SLEKIQENNEAEIMQICLEEARESFDPKI 145


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 9   EHFLL*AFVDSIXNLQKLHQNNEAYFLR 92
           EHF++    DS+ NLQ  H+N  A  L+
Sbjct: 906 EHFIM--LSDSMANLQVEHENMSALLLK 931


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,317
Number of Sequences: 5004
Number of extensions: 36694
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)