Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    31   0.46 
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265...    31   0.80 
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    29   3.2  
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    29   3.2  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    29   3.2  
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    29   3.2  

>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 305 CTSLWLTEAIS----YTGDTPRFV*QYFSXNIGGCKK*SNLRCGQWPR 436
           C+  W  + +S    YT   P  V  YF  ++GG  + S+ RCG   R
Sbjct: 480 CSDDWTAKTVSVMTFYTNPIPSVVQSYFILSLGGVTRTSHKRCGNQSR 527


>08_01_1048 +
           10624027-10624575,10625332-10625522,10626044-10626539,
           10626664-10626749,10626853-10627033
          Length = 500

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 312 VYGSLKRYPIPAIHPDLYDNILVXISAAARSNQIYVVVNGRELMDCTKNDTGEPCPELKE 491
           VY ++  +P+  +  D Y  ++V + A+AR  Q+Y +       D    D  +  PE  E
Sbjct: 117 VYENVLFFPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYADV--YDPDDDWPEPAE 174

Query: 492 Y 494
           Y
Sbjct: 175 Y 175


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 369 RQKVHCLNTLFSKLQINQSIIFCNSVNR 396


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 346 RQKVHCLNTLFSKLQINQSIIFCNSVNR 373


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 356 RQKVHCLNTLFSKLQINQSIIFCNSVNR 383


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 282 TNKTTAFVVPVYGSLKRYPIPAIHPDLYDNILVXISAAAR-SNQIYVV 422
           + KT AFVVPV   L+R P P   P  ++ + + IS     S+QIY V
Sbjct: 71  SGKTLAFVVPVVEILRRRPSP---PKPHEVLGIIISPTRELSSQIYNV 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,708,041
Number of Sequences: 37544
Number of extensions: 229469
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)