Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        30   1.1  
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         30   1.1  

>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
 Frame = +3

Query: 255  IIVFPELCLT--NKTTAFVVPVYGSLKRYPI---PAIHPDLYDN--ILVXISAAARSNQI 413
            IIVFPE  LT  N+T +       ++    I   P + P +     IL  +S  AR   +
Sbjct: 922  IIVFPEYGLTGWNQTRSVFKHFLENIPDPKISSNPCLDPGINKTTPILYRLSCLARKYAM 981

Query: 414  YVVVNGRELMDCTKNDTGEP-CPELKEYIFNT 506
            Y+VVN  ++  C K    +P CP    Y +NT
Sbjct: 982  YLVVNMGDIKPCQK--ASDPHCPGDGRYQYNT 1011


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           K K+HC +  F   Q+NQ ++   SV+R
Sbjct: 276 KQKVHCLNTLFQKLQINQSIIFCNSVQR 303


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           K K+HC +  F   Q+NQ ++   SV+R
Sbjct: 276 KQKVHCLNTLFQKLQINQSIIFCNSVQR 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,007,959
Number of Sequences: 59808
Number of extensions: 282963
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)