Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protei...    31   2.0  
BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding ...    30   6.1  
BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding ...    30   6.1  
BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding ...    30   6.1  
BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.        30   6.1  
AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding ...    30   6.1  
AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding ...    30   6.1  

>X85134-1|CAA59446.1|  538|Homo sapiens RB protein binding protein
           protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  EL++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQELQDLVNRTPW 254


>BC075060-1|AAH75060.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


>BC075059-1|AAH75059.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


>BC053856-1|AAH53856.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


>BC037284-1|AAH37284.1|  500|Homo sapiens RBBP5 protein protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


>AL583832-2|CAI15287.1|  500|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


>AL583832-1|CAI15286.1|  538|Homo sapiens retinoblastoma binding
           protein 5 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKEYIFNTKW 512
           +++I  V +GRE++ C ++   EP  +L++ +  T W
Sbjct: 218 ADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPW 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,857,446
Number of Sequences: 237096
Number of extensions: 1239137
Number of successful extensions: 2324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)