Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   2.2  
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    28   3.9  
L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        27   6.7  
AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    27   6.7  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   6.7  
AC006615-1|AAK68230.1|  149|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 324  LKRYPIPAIHPDLYDNILVXISAAARSNQIYVVVNGRELMDCTKN 458
            +++Y   ++H D+    ++ + A A+++ +YVV    E+  C  N
Sbjct: 2008 IQKYRAHSLHSDIGKKRILKLVADAKNDLVYVVTRQNEVWKCATN 2052


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 382 QYRRLQEVIKSTLWSMAESSWTVLRMTPANLV 477
           ++R + EV+   +WS   S WT+       LV
Sbjct: 234 RHRHINEVVDCNIWSRGHSKWTIFADLDERLV 265


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           K K+HC +  F   Q+NQ ++   S +R
Sbjct: 265 KQKVHCLNTLFRKLQINQSIIFCNSTQR 292


>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 355 GCIAGIGYRFSEP*TGTTKAVVLFVKHSSGKTMILRAV*Q 236
           G   GIG +F    +G    +V+F    +GKT  +RA+ Q
Sbjct: 403 GYYTGIGRKFERVASGCEITLVVFGHSGAGKTTFVRAIRQ 442


>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 355 GCIAGIGYRFSEP*TGTTKAVVLFVKHSSGKTMILRAV*Q 236
           G   GIG +F    +G    +V+F    +GKT  +RA+ Q
Sbjct: 358 GYYTGIGRKFERVASGCEITLVVFGHSGAGKTTFVRAIRQ 397


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 402 SNQIYVVVNGRELMDCTKNDTGEPCPELKE 491
           SNQ++V  +  E   C KN T + CP  KE
Sbjct: 48  SNQVFVPYSKIETDYCKKNLTDQRCPGTKE 77


>AC006615-1|AAK68230.1|  149|Caenorhabditis elegans Hypothetical
           protein C36B7.4 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   SXNTFYYK-HLLIQLXIYKSYIKTMKLIFYGLL 99
           S NTFY    L +   +YK ++ TMKLI   LL
Sbjct: 30  SENTFYNPCSLNVYKDVYKQFVVTMKLILQILL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,419
Number of Sequences: 27780
Number of extensions: 205269
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)