Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.88 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.88 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.88 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   0.88 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 417 VVVNGRELMDCTKNDTGE 470
           +++NGR+LM C +  +G+
Sbjct: 229 IIMNGRDLMACAQTGSGK 246


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 264 FPELCLTNKTTAFVVPVYGSLKRYPIP 344
           FP LC  N   AF+VP + +L    +P
Sbjct: 45  FPYLCYKNGGGAFMVPYFIALALAGVP 71


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 264 FPELCLTNKTTAFVVPVYGSLKRYPIP 344
           FP LC  N   AF+VP + +L    +P
Sbjct: 98  FPYLCYKNGGGAFMVPYFIALALAGVP 124


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 64  IKTMKLIFYGLLIFSLAKATSQK 132
           +K + LIFYG ++FS+ +   ++
Sbjct: 19  VKIVLLIFYGSIMFSMTQVNKEE 41


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 484 SSGQGSPVSFLVQSM 440
           S+G G PVS +VQ+M
Sbjct: 183 STGMGGPVSLVVQAM 197


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 16  FYYKHLLIQLXIYKSYIKTMKLIFYGLLIFSLAKATSQKSTPEDSQY 156
           FYY    +   +Y       +  F  +L     K +SQKS P  S Y
Sbjct: 336 FYYLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIY 382


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 178 IMSDDVEDNIRNYIHYIEEAAKQ 246
           + +D   +N  NY HY    AKQ
Sbjct: 70  LATDTTSENEENYPHYQMSGAKQ 92


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 489 EYIFNTKWCLIGTXRLL 539
           EY+ N +W L GT  L+
Sbjct: 167 EYVGNIRWELAGTLLLV 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,276
Number of Sequences: 438
Number of extensions: 2666
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)