Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20116
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    29   2.0  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    29   2.0  
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    29   2.7  
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    29   2.7  
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              29   2.7  

>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 353 RQKIHCLNTLFSKLQINQSIIFCNSVNR 380


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 353 RQKIHCLNTLFSKLQINQSIIFCNSVNR 380


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 346 RQKVHCLNTLFSKLQINQSIIFCNSVNR 373


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 346 RQKVHCLNTLFSKLQINQSIIFCNSVNR 373


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNXQLNQQMLIVKSVRR 4
           + K+HC +  F   Q+NQ ++   SV R
Sbjct: 376 RQKVHCLNTLFSKLQINQSIIFCNSVNR 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,269
Number of Sequences: 28952
Number of extensions: 185724
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)