Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20115
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.3  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 435  NCYIYNRLTSMCFFPYFFYLPVACSCN 355
            N YI +  +S  F+  F Y     SCN
Sbjct: 946  NDYIVDESSSSSFYSSFLYKSSESSCN 972


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 73  STNNYLVHG*NYYRNSKYFLYSK 5
           S +N  +H  N Y N+ Y  Y K
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYKK 106


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 562 FSVGSNTPLLAKFTVKAGVL 503
           F +GS TP+ AK+ + + V+
Sbjct: 4   FQLGSGTPMGAKYLMDSDVI 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,819
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)