Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20114
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.8  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    24   9.0  

>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 141 EKLPTQQALQAVQDFLACGVENNLLTE 221
           EKLP   A   + D + C    +LLTE
Sbjct: 149 EKLPPSSAEDGIYDLVICSFALHLLTE 175


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 194 TG*KVLDRLQCLLGRQLLPKVANETDPYGY 105
           TG +++ ++  LLG  +LP + N  D  G+
Sbjct: 547 TGVRIIQQIALLLGCSILPHLKNLVDCIGH 576


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 202 STPQAKKSWTACSACWVGSFSLKSPMKPIP 113
           +TP + KS +A    W  SFS ++P    P
Sbjct: 477 TTPTSAKSDSASPQNWFSSFSYQTPNSASP 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,643
Number of Sequences: 5004
Number of extensions: 34979
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)