Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20114
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089...    27   5.1  
08_02_0439 + 17184384-17184474,17184614-17184711,17185134-171853...    27   6.7  
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159...    27   6.7  
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    27   8.8  

>02_05_0886 +
           32507324-32507938,32508103-32508252,32508498-32508935,
           32509038-32509151,32509256-32509852
          Length = 637

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 333 STFRALSSQWGQLSISDCSTAPGLSVLS 250
           +TF  LSS     S+SD S AP  S LS
Sbjct: 477 ATFMLLSSTTSSSSVSDASAAPSSSYLS 504


>08_02_0439 +
           17184384-17184474,17184614-17184711,17185134-17185310,
           17185450-17185550,17186028-17186103,17186438-17186682,
           17186784-17186880,17186990-17187076,17187268-17187362,
           17187462-17187553,17187630-17187707,17187832-17187992,
           17188095-17188307
          Length = 536

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  GAGWNHIGAHTLHYNNISIGIGFIGDF 137
           G GW    A  L+ NN  IG+ F G F
Sbjct: 320 GIGWQEYNAFALYVNNQGIGLLFDGLF 346


>06_02_0324 +
           14414422-14414541,14415271-14415347,14415807-14415994,
           14416276-14416373,14416633-14416766,14416852-14416953,
           14417931-14418038,14418335-14418465,14420068-14420142,
           14420439-14420518,14421229-14421320,14422333-14422634,
           14422717-14422856
          Length = 548

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 36  GNGKIYE---GAGWNHIGAHTLHYNNISIGIGFIGDFREKLPTQQALQA 173
           G GK+Y    GAGWN  G +    +   +G   +  FR+ L T +   A
Sbjct: 385 GKGKLYPQVMGAGWNESGENRAASSAQLVGWPPVRTFRKNLSTPKPADA 433


>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -1

Query: 314 QANGANFRFLIAVQLQDLACY-QLLVTNDVVVFSQ*VIFNPTG*KVLDRLQCLLGRQLLP 138
           +A  AN   +   ++ DL    ++++ +D     + ++ NP   + L R Q +LG    P
Sbjct: 9   EALAANISAMSRPEMYDLMSQMKVMIDHDQERVRRMLVDNPDVTRALFRAQVVLGMVKAP 68

Query: 137 KVANETDPYGYIIVVQCVSTDMVPT 63
           K A  +D      V    S+ + PT
Sbjct: 69  KTAQSSDKAQPAAVQATPSSSVKPT 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,584
Number of Sequences: 37544
Number of extensions: 236709
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)