Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20114
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)                 29   2.2  
SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)            28   3.0  
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  28   3.0  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 27   5.2  
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           27   6.9  

>SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)
          Length = 424

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 12  LGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIGIGFI 128
           +G+S    G  K+  G  W    A TL YN + + +GF+
Sbjct: 159 VGWSKFVPGAAKVSCGPDWETQNASTLSYNIVLLIVGFV 197


>SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)
          Length = 127

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 125
           + D+GY+ + G N   Y   G+N IG + + YN+I    IG+
Sbjct: 48  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 88



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 125
           + D+GY+ + G N   Y   G+N IG + + YN+I    IG+
Sbjct: 58  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 98



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 125
           + D+GY+ + G N   Y   G+N IG + + YN+I    IG+
Sbjct: 68  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 108



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNISIG-IGF 125
           + D+GY+ + G N   Y   G+N IG + + YN+I    IG+
Sbjct: 78  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDIGYNDIGY 118



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNI 107
           + D+GY+ + G N   Y   G+N IG + + YN+I
Sbjct: 88  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDI 121



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 3   FKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNNI 107
           + D+GY+ + G N   Y   G+N IG + + YN+I
Sbjct: 93  YNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYNDI 126


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 48  IYEGAGWNHIGAHTLHYNNISIGIGFIGDFREKLPTQQALQAVQDFLACG 197
           IYE   +     +  H N   IG+G IG+F   +   + L  V++ + CG
Sbjct: 144 IYEEVAYEIYSLNNKHQN---IGLGMIGEFETPMNETEFLAFVKNKMQCG 190


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 211 KLFSTPQAKKSWTACSAC 158
           KLF TP++K+S T C  C
Sbjct: 204 KLFKTPESKESKTKCGRC 221


>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 4   SRTWAIHSWLEATEKFMKERVGTISVLTHCTTI 102
           SR+ ++HSW++ T K M +     +  T C TI
Sbjct: 536 SRSGSLHSWVDGTIKNMDQPESQQTSQTDCDTI 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,403
Number of Sequences: 59808
Number of extensions: 252879
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)