Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20114
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   8.0  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    27   8.0  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 VQDFLACGVENNLLTEDYHVVGHQQ 248
           +++ LAC + N  + EDY ++ H+Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 VQDFLACGVENNLLTEDYHVVGHQQ 248
           +++ LAC + N  + EDY ++ H+Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 270 ELYCNQKSKVGPIGLIMLEKYWVNILFT 353
           E++C +KSK   +G+    +Y+V+ + T
Sbjct: 338 EIFCGEKSKTQVVGIYQKIRYYVSNMIT 365


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 40  TEKFMKERVGTISVLTHCTTIIYP 111
           TE+  KERV T  + T+C  I+ P
Sbjct: 223 TEQIEKERVDTAEIGTNCNIIVTP 246


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 40  TEKFMKERVGTISVLTHCTTIIYP 111
           TE+  KERV T  + T+C  I+ P
Sbjct: 223 TEQIEKERVDTAEIGTNCNIIVTP 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,707
Number of Sequences: 27780
Number of extensions: 196439
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)