Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20114
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    29   1.8  
At2g11345.1 68415.m01217 hypothetical protein similar to At3g426...    28   2.4  
At2g04100.1 68415.m00393 MATE efflux family protein similar to r...    27   4.2  
At2g04040.1 68415.m00385 MATE efflux family protein contains Pfa...    27   4.2  
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    27   7.4  
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic...    27   7.4  
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG...    27   7.4  

>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 3   FKDLGYS-FVAGGNGKIYEGAGW-NHIGAHTLHYNNISIGIG 122
           F   GY  F  GGN  IY+G G  N+IG  ++ ++N +  +G
Sbjct: 232 FSGGGYGIFSDGGNTSIYDGGGMINNIGTDSVDHDNNADVVG 273


>At2g11345.1 68415.m01217 hypothetical protein similar to At3g42690,
           At4g04130
          Length = 138

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 132 DFREKLPTQQALQAVQDFLACGVENNLLTE 221
           +FR+KLPT+  ++A QD     V N L  E
Sbjct: 29  EFRDKLPTESEVEAHQDPACLSVWNRLFGE 58


>At2g04100.1 68415.m00393 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 15  GYSFVAGGNGKIYEGAGWNHIGA 83
           G+S V GG   +  G+GW HIGA
Sbjct: 388 GFSAVLGG---VARGSGWQHIGA 407


>At2g04040.1 68415.m00385 MATE efflux family protein contains Pfam
           profile: PF01554 uncharacterized membrane protein family
          Length = 476

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 24  FVAGGNGKIYEGAGWNHIGA--HTLHYNNISIGIGFIGDFREKL 149
           F A  NG +  G+GW HIGA  +T+ Y  +   +G    F  +L
Sbjct: 386 FTAVLNG-VARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSREL 428


>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 7   RTWAIHSWLEATEKFM 54
           R W  H W++A EKF+
Sbjct: 77  RVWNYHEWIQAFEKFL 92


>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
           to mRNA cap binding protein [Arabidopsis thaliana]
           GI:15192738; contains Pfam profile PF02854: MIF4G
           domain; identical to cDNA nuclear cap-binding protein
           CBP80 GI:8515770
          Length = 848

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 FIGDFREKLPTQQALQAVQDFLACGVENN 209
           F+G  +E+LP    +++VQD  + G E++
Sbjct: 741 FLGVLKERLPDPTKVRSVQDLKSIGAEDD 769


>At1g66780.1 68414.m07591 MATE efflux family protein contains
           TIGRfam profile: TIGR00797: MATE efflux family protein,
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 485

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 21  SFVAGGNGKIYEGAGWNHIGAHTL--HYNNISIGIGFIGDFREKL 149
           SF+A  +G +  G GW HIGA+     Y  + I +G I  F  KL
Sbjct: 393 SFLAVLSG-VARGTGWQHIGAYANIGSYYLVGIPVGSILCFVVKL 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,146,570
Number of Sequences: 28952
Number of extensions: 184551
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)