Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20113
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.9  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   3.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.1  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.8  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.8  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   9.0  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   9.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 181  SLEYENQGKGSIIQNVVNNLIIDGSGTPWSTA 276
            SL + N+G+  I+  +V    I GS   WS A
Sbjct: 2081 SLNFGNEGRYDILYWIVRACFIQGSQQVWSAA 2112


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 487 LPCGRTTGVLQDPQH*VQPVLETKFD 564
           +PCG  + +  + +H +QP L+  FD
Sbjct: 205 IPCGTVSYIKMEKRHWIQPELQYVFD 230


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 256 GTPWSTATSCGSATDSTLSESTSP 327
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 264 MEYCYKLWVGNGQHIVRKYFPY 329
           +EYC +L V  G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 112 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 219
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 112 NKELEEKLYNSILTGDYDSAVRQSLE 189
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 282 ACSSTPWCSASVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFF 115
           A SST    A+ +  +        ++  +    AL  S +++TGE+  +Q L E F
Sbjct: 242 AFSSTAGMKATESINIYTLPFCSDSIPRLQTLPALNSSKIIITGEEEKLQRLEEAF 297


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 348 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 479
           AG +   I+  Y+ +++  P + P NE   YG    +  +L  W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,474
Number of Sequences: 5004
Number of extensions: 45100
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)