Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20113
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0206 - 18493178-18495310                                         28   5.3  
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    28   7.0  
10_01_0117 + 1447741-1449123                                           27   9.2  

>03_04_0206 - 18493178-18495310
          Length = 710

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 147 DAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHHEKF 28
           + V   ++    +  H YRG+F D  +  E  R+E + KF
Sbjct: 364 NTVCNEIIHLHDKNLHVYRGNFDDFESGYEQKRKEMNRKF 403


>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 387 LALKLGPTLDPANERLAYGDGKEKNS 464
           +AL  GP L P N   A+G G E  S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGS 171


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = -1

Query: 303 AVRCRPTACSSTPWCSASVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLL 124
           A R    A +S P  S S +   V  +LDD   ALVLV   L + A+V  G  A    LL
Sbjct: 164 AARALAAAVASFPAASDSASASSV--LLDDVLAALVLV-MPLDEEAIVAIGSSAASVALL 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,181,654
Number of Sequences: 37544
Number of extensions: 324404
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)