Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20113
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91) 29 2.3
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1) 28 7.1
SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 9.4
SB_36057| Best HMM Match : DUF626 (HMM E-Value=2) 27 9.4
SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014) 27 9.4
SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 9.4
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 9.4
SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 9.4
>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 594 ITRS*VLQSVVELSFKYWLYLVLWILKYTCCSP 496
+ S +L V F+ WL L+LW++ CSP
Sbjct: 135 VVSSPILARVRRFRFRKWLPLLLWLISLIICSP 167
>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
Length = 249
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 387 LALKLGPTLDPANERLAYGD 446
+++KL P +DP RLAYGD
Sbjct: 6 ISVKLPPDIDPTKARLAYGD 25
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 280 SCGSATDSTLSESTSPITLDSSWP 351
S GS TDS S STSP+ L + P
Sbjct: 619 SAGSGTDSASSRSTSPLNLPYTSP 642
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 309 QCAVRCRPTACSSTPWCSASV--NDQVVNYILDD 214
QC +R RP A +S W ++SV + ++ +LDD
Sbjct: 473 QCTMRARPLAGASRDWVTSSVVSSSASLSCVLDD 506
>SB_14042| Best HMM Match : WD40 (HMM E-Value=2.1)
Length = 236
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 280 SCGSATDSTLSESTSPITLDSSWP 351
S GS TDS S STSP+ L + P
Sbjct: 64 SAGSGTDSASSRSTSPLNLPYTSP 87
>SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 550
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 216 PTCEAEIRGMVFNFIIDSGAAANIV 240
>SB_36057| Best HMM Match : DUF626 (HMM E-Value=2)
Length = 401
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 309 QCAVRCRPTACSSTPWCSAS--VNDQVVNYILDD 214
QC +R RP A +S W ++S N ++ +LDD
Sbjct: 19 QCTMRARPLAGASRDWVTSSGVSNSASLSCVLDD 52
>SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
Length = 377
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 227 PTCEAEIRGMVFNFIIDSGAAANIV 251
>SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 170 PTCEAEIRGMVFNFIIDSGAAANIV 194
>SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 285
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 100 PTCEAEIRGMVFNFIIDSGAAANIV 124
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 1304 PTCEAEIRGMVFNFIIDSGAAANIV 1328
>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 799
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 291 PTCEAEIRGMVFNFIIDSGAAANIV 315
>SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 285
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 PWCSASVNDQVVNYILDDGALALVL 193
P C A + V N+I+D GA A ++
Sbjct: 100 PTCEAEIRGMVFNFIIDSGAAANIV 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,409,127
Number of Sequences: 59808
Number of extensions: 369910
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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