Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20113
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    26   0.85 
AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F rec...    25   2.6  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   3.4  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   6.0  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   6.0  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +1

Query: 214 IIQNVVNNLIIDGSGTPWSTATSCGSATDSTLSESTSPITLD 339
           +++ ++++L  +     WS  ++ GS   +T +   +P+T D
Sbjct: 435 VLERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAPVTDD 476


>AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F
           receptor protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 305 VLSVADPQLVAVLHGVPLPSMIRLLTTFWMMEPLPWFSYS 186
           ++++A   L+  L  +PL +++ +LT +W M  LP+   S
Sbjct: 80  IVNLAVSDLLLCLVTMPL-TLVEILTKYWPMGRLPFLCKS 118


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 129 ETVQQHPHR*LRQRCPSELGIRE--PRQGLHHPECS*QPDH*RKRNT 263
           E + ++ H  +R+  PS    R   PR G   P C   P   R R+T
Sbjct: 237 ENIYKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRST 283


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 270 YCYKLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 377
           Y  K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 423 YGNKINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 270 YCYKLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 377
           Y  K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 423 YGNKINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,874
Number of Sequences: 2352
Number of extensions: 12197
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)