Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20113
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    28   4.8  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 136 YNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSGTP 264
           YN+   GD +  +     YE + + S + NV NNLI   SG P
Sbjct: 492 YNADFDGD-EMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 533


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 81  SDAGADGEHARREHHEKFHYDSCLF 7
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 81  SDAGADGEHARREHHEKFHYDSCLF 7
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 259 TPWSTATSCGSATDSTLSESTSPITLDSS 345
           T  ST  S  ++TDST +EST+  T +S+
Sbjct: 194 TATSTTESTSTSTDSTTTESTTESTTEST 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,441
Number of Sequences: 27780
Number of extensions: 267308
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)